5 research outputs found
factors repress starch synthesis and gravitropic growth responses
No full textPlants perceive the direction of gravity during skotomorphogenic growth, and of gravity and light during photomorphogenic growth. Gravity perception occurs through the sedimentation of starch granules in shoot endodermal and root columella cells. In this study, we demonstrate that the Arabidopsis thaliana GATA factors GNC (GATA, NITRATE-INDUCIBLE, CARBON METABOLISM-INVOLVED) and GNL/CGA1 (GNC-LIKE/CYTOKININ-RESPONSIVE GATA1) repress starch granule growth and amyloplast differentiation in endodermal cells.
In our comprehensive study, we analysed gravitropic responses in the shoot, root and hypocotyl. We performed an RNA-seq analysis, used advanced microscopy techniques to examine starch granule size, number and morphology and quantified transitory starch degradation patterns. Using transmission electron microscopy, we examined amyloplast development.
Our results indicate that the altered gravitropic responses in hypocotyls, shoots and roots of gnc gnl mutants and GNL overexpressors are due to the differential accumulation of starch granules observed in the GATA genotypes. At the whole-plant level, GNC and GNL play a more complex role in starch synthesis, degradation and starch granule initiation.
Our findings suggest that the light-regulated GNC and GNL help balance phototropic and gravitropic growth responses after the transition from skotomorphogenesis to photomorphogenesis by repressing the growth of starch granules.publishe
Preparation of Clathrin-Coated Vesicles From Arabidopsis thaliana Seedlings
No full textClathrin coated vesicles (CCVs) mediate endocytosis of plasma membrane proteins and deliver their content to the endosomes for either subsequent recycling to the plasma membrane or transport to the vacuole for degradation. CCVs assemble also at the trans-Golgi network (TGN) and is responsible for the transport of proteins to other membranes. Oligomerization of clathrin and recruitment of adaptor protein complexes promote the budding and the release of CCVs. However, many of the details during plant CCV formation are not completely elucidated. The analysis of isolated CCVs is therefore important to better understand the formation of plant CCVs, their cargos and the regulation of clathrin-mediated transport processes. In this article, we describe an optimized method to isolate CCVs from Arabidopsis thaliana seedlings
Optical Conductivity and Photo-Induced Polaronic Formation in Co<sub>2</sub>MnGa Topological Semimetal
No full textTopological materials occupy an important place in the quantum materials family due to their peculiar low-energy electrodynamics, hosting emergent magneto-electrical, and nonlinear optical responses. This manuscript reports on the optical responses for the magnetic topological nodal semimetal Co2MnGa, studied in a thin film geometry at various thicknesses. The thickness-dependent optical conductivity is investigated, observing a substantial dependence of the electronic band structure on thickness. Additionally, details on the ultrafast response of the low energy excitations in the terahertz frequency are reported by employing optical pump-terahertz probe (OPTP) spectroscopy. In particular, the photocarrier dynamics of Co2MnGa thin films is studied at varying pump fluence, pump wavelength, and film thickness, observing a negative THz photoconductivity which is assigned to a dynamical formation of large polarons in the material. © 2024 The Author(s). Advanced Science published by Wiley-VCH GmbH
Drawdown of soil phosphorus by crop removal: A meta-analysis of 56 fields with interrupted fertilization
No full textThis article was originally published in Agricultural & Environmental Letters. The version of record is available at: https://doi.org/10.1002/ael2.70007.
© 2025 The Author(s). Agricultural & Environmental Letters published by Wiley Periodicals LLC on behalf of American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America.
This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.Phosphorus (P) is an essential nutrient applied as fertilizer in agricultural fields. However, excessive fertilization leads to P build up in soils, increasing its potential to cause environmental pollution. The objective of this study was to evaluate the average P drawdown rate of 56 sites with drawdown management presented in 14 publications. Soil test P (STP) results were converted to Mehlich-3 equivalent and resampling analysis was used to compare the annual drawdown rate in fields grouped by four initial STP classes. The STP was reduced by 4.3%–8.2% per year, depending on the initial STP class. It took from 8.4 to 15.9 years to reduce the STP by half. The resulting equations from this meta-analysis can be used by landowners to estimate the time needed for STP drawdown by cropping without additional P to achieve the desired STP concentration.
Core Ideas
- Cropping without phosphorus (P) fertilization is one of the few options to reduce soil test P (STP).
- A meta-analysis of the annual P drawdown rate was performed using 56 sites presented in 14 publications.
- Fields were grouped into four initial STP classes based on Mehlich-3 STP equivalent.
- The STP was reduced from 4.3% to 8.2% per year in fields with high and low initial STP.
- The time needed to reduce the STP by half varied from 8.4 to 15.9 years depending on the initial STP.
Graphical Abstract available at: https://doi.org/10.1002/ael2.70007
Abbreviations
ICP
inductively coupled plasma optical emission spectroscopy
IPNI
International Plant Nutrition Institute
STP
soil test phosphorus
STPi
initial soil test phosphoru
Arabidopsis CaLB1 undergoes phase separation with the ESCRT protein ALIX and modulates autophagosome maturation
No full textAbstract Autophagy is relevant for diverse processes in eukaryotic cells, making its regulation of fundamental importance. The formation and maturation of autophagosomes require a complex choreography of numerous factors. The endosomal sorting complex required for transport (ESCRT) is implicated in the final step of autophagosomal maturation by sealing of the phagophore membrane. ESCRT-III components were shown to mediate membrane scission by forming filaments that interact with cellular membranes. However, the molecular mechanisms underlying the recruitment of ESCRTs to non-endosomal membranes remain largely unknown. Here we focus on the ESCRT-associated protein ALG2-interacting protein X (ALIX) and identify Ca2+-dependent lipid binding protein 1 (CaLB1) as its interactor. Our findings demonstrate that CaLB1 interacts with AUTOPHAGY8 (ATG8) and PI(3)P, a phospholipid found in autophagosomal membranes. Moreover, CaLB1 and ALIX localize with ATG8 on autophagosomes upon salt treatment and assemble together into condensates. The depletion of CaLB1 impacts the maturation of salt-induced autophagosomes and leads to reduced delivery of autophagosomes to the vacuole. Here, we propose a crucial role of CaLB1 in augmenting phase separation of ALIX, facilitating the recruitment of ESCRT-III to the site of phagophore closure thereby ensuring efficient maturation of autophagosomes
