2,907 research outputs found
LazyLoad YES License LGPL-3
No full textDescription Represents metagenomic samples on the Euclidean space to examine similarity amongst samples by studying clusters in the model. Given the matrix of metagenomic counts for samples, this package (1) quantifies dissimilarity between samples using Kendall's tau-distance, (2) constructs multidimensional models of different dimension, and (3) plots the models for visualization and comparison. Depends R (> = 3.0.0
gee Function to solve a Generalized Estimation Equation Model Description Usage
No full text4.13). Note that maintainers are not available to give advice on using a package they did not author
Enhances Biobase
No full textVersion 1.0-24 Description Conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation,censored, ordered and multivariate problems. Depends R (> = 2.2.0), methods, survival Imports modeltools (> = 0.2-9), mvtnorm (> = 0.8-0) Suggests multcomp, xtable, e1071, vcd, TH.dat
Suggests MASS
No full textPredictive) and ML estimation of non-parametric and parametric components of the ETAS model for earthquake description. Version 1.0.2 Date 2014-3-27 Description Estimation of the components of an ETAS model for earthquake description. Non-parametric background seismicity can be estimated through FLP (Forward Likelihood Pre-dictive), while parametric components are estimated through maximum likelihood. The two estimation steps are alternated until convergence is obtained. For each event the proba-bility of being a background event is estimated and used as a weight for decluster-ing steps. Many options to control the estimation process are present. Some descriptive func-tions for earthquakes catalogs are present; also plot, print, summary, profile methods are de-fined for main output (objects of class ``etasclass'')
Title Support Functions and Datasets for Venables and Ripley's MASS
No full text2 R topics documented: R topics documented: abbey............................................ 5 accdeaths.......................................... 5 addterm........................................... 6 Aids2............................................
Description
No full textDescription A package that provides functions for measuring spatial segregation. The methods implemented in this package includ
Suggests biclust, testthat
No full textDescription Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also contains some visualizations techniques based on seriation
License GPL (> = 2)
No full textape provides functions for reading, writing, plotting, and manipulating phylogenetic trees, analyses of comparative data in a phylogenetic framework, ancestral character analyses, analyses of diversification and macroevolution, computing distances from allelic and nucleotide data, reading and writing nucleotide sequences, and several tools such as Mantel's test, generalized skyline plots, graphical exploration of phylogenetic data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean path lengths and penalized likelihood. Phylogeny estimation can be done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and several methods handling incomplete distance matrice
NeedsCompilation yes Repository CRAN
No full textR topics documented: character or NULL-class.................................. 2 lsq.............................................. 2 matrix.coo-class....................................... 4 matrix.csc-class....................................... 4 matrix.csc.hb-class..................................... 5 matrix.csr-class....................................... 6 matrix.csr.chol-class.................................... 8 matrix.ssc-class....................................... 9 matrix.ssc.hb-class..................................... 10 matrix.ssr-class....................................... 11 mslm-class......................................... 12 numeric or NULL-class................................... 12 slm.............................................. 13 slm-class.......................................... 1
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