582 research outputs found

    AAS227 - Synthesizing Understanding from Data with yt

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    This is a talk I gave at the AAS227 about yt.  yt is available at yt-project.org.<div><br></div><div>While I am listed as the author of this talk, the yt community is composed of more than a hundred code contributors and mailing list participants, and we are grateful to their involvement and support.</div><div><br></div><div>Additionally, the yt project is built on other members of the scientific software ecosystem such as Jupyter, NumPy, Cython, h5py and hdf5, Matplotlib, and Sympy.</div

    Pollution Source Investigation and Water Quality Management in the Carp Lake Watershed, Taiwan

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    [[abstract]]In this study, a full survey of pollutant sources and water quality was conducted, followed by the application of a water quality model (Water Quality Analysis Simulation Program, WASP) to establish strategies of water quality control in Carp Lake, Taiwan. Results of the field investigation show that both point and non-point source (NPS) pollutants were responsible for the poor water quality. The contributions of biochemical oxygen demand (BOD) from point source and NPS pollution were 45.9 and 55.1%, respectively. About 80% of total phosphorus (TP) were contributed by NPS. Additionally, point source and NPS pollution discharged 55.5 and 44.5% of NH3N load, respectively. The Carlson's Trophic State Index ranged from 61.9 to 69.2 showing serious eutrophic problems in Carp Lake. The calculated BOD, NH3N, and TP carrying capacity were approximately 2.8, 0.42, and 0.15?kg per day, respectively. However, the current pollutant loadings are approximately 3.05.5 times the calculated carrying capacity. With the help of the calibrated WASP model, remedial strategies for the lake water from short-term to long-term were developed. The completion of the small local sewer system to remove 80% of the point source pollution can serve as a short-term goal while 4060% of NPS removal by natural treatment systems may serve as a mid-term goal. Furthermore, 80% of both source point and NPS pollution removal can be considered as a long-term strategy. Results of heavy metal analysis show that the enriched sediment would be safe for agricultural applications.[[note]]SC

    Effect of donepezil on transcranial magnetic stimulation parameters in Alzheimer's disease

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    Introduction: There is a need for a reliable, noninvasive biomarker for Alzheimer's disease (AD). We assessed whether short-latency afferent inhibition (SAI), a transcranial magnetic stimulation paradigm that assesses cholinergic circuits of the brain, could become such a biomarker. Methods: Nineteen patients with AD underwent four SAI testing sessions. The timing of their usual donepezil dose was altered to create different cholinergic states for each session. This was compared to the SAI results from 20 healthy subjects. Results: SAI was not able to distinguish the different cholinergic states assessed in our study. There appeared to be a diurnal variation in cholinergic function in the control group, which was not present in the AD cohort. Discussion: SAI does not appear to have a role in diagnosis and assessment of AD patients. The loss of diurnal variation, however, warrants further investigation as it may provide further biochemical insights about AD

    A Hormone Receptor-Based Transactivator Bridges Different Binary Systems to Precisely Control Spatial-Temporal Gene Expression in Drosophila

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    [[abstract]]The GAL4/UAS gene expression system is a precise means of targeted gene expression employed to study biological phenomena in Drosophila. A modified GAL4/UAS system can be conditionally regulated using a temporal and regional gene expression targeting (TARGET) system that responds to heat shock induction. However heat shock-related temperature shifts sometimes cause unexpected physiological responses that confound behavioral analyses. We describe here the construction of a drug-inducible version of this system that takes advantage of tissue-specific GAL4 driver lines to yield either RU486-activated LexA-progesterone receptor chimeras (LexPR) or beta-estradiol-activated LexA-estrogen receptor chimeras (XVE). Upon induction, these chimeras bind to a LexA operator (LexAop) and activate transgene expression. Using GFP expression as a marker for induction in fly brain cells, both approaches are capable of tightly and precisely modulating transgene expression in a temporal and dosage-dependent manner. Additionally, tissue-specific GAL4 drivers resulted in target gene expression that was restricted to those specific tissues. Constitutive expression of the active PKA catalytic subunit using these systems altered the sleep pattern of flies, demonstrating that both systems can regulate transgene expression that precisely mimics regulation that was previously engineered using the GeneSwitch/UAS system. Unlike the limited number of GeneSwitch drivers, this approach allows for the usage of the multitudinous, tissue-specific GAL4 lines for studying temporal gene regulation and tissue-specific gene expression. Together, these new inducible systems provide additional, highly valuable tools available to study gene function in Drosophila.[[note]]SC

    Can Cause and Effect be Distinguised by Simple Regression? ESRI Memorandum Series No. 50 (revised) 1968(?)

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    Let data be (Xt, Yt), t = 1, 2, ..., T. We assume throughout that T is "large". We try to evolve statistical tests for identifying whether X or Y is the cause, the other variable being the effect
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