1,720,995 research outputs found
On the efficacy of handcrafted and deep features for seed image classification
Full text linkComputer vision techniques have become important in agriculture and plant sciences due to their wide variety of applications. In particular, the analysis of seeds can provide meaningful information on their evolution, the history of agriculture, the domestication of plants, and knowledge of diets in ancient times. This work aims to propose an exhaustive comparison of several different types of features in the context of multiclass seed classification, leveraging two public plant seeds data sets to classify their families or species. In detail, we studied possible optimisations of five traditional machine learning classifiers trained with seven different categories of handcrafted features. We also fine-tuned several well-known convolutional neural networks (CNNs) and the recently proposed SeedNet to determine whether and to what extent using their deep features may be advantageous over handcrafted features. The experimental results demonstrated that CNN features are appropriate to the task and representative of the multiclass scenario. In particular, SeedNet achieved a mean F-measure of 96%, at least. Nevertheless, several cases showed satisfactory performance from the handcrafted features to be considered a valid alternative. In detail, we found that the Ensemble strategy combined with all the handcrafted features can achieve 90.93% of mean F-measure, at least, with a considerably lower amount of times. We consider the obtained results an excellent preliminary step towards realising an automatic seeds recognition and classification framework
Gastric Cancer Image Classification: A Comparative Analysis and Feature Fusion Strategies
Full text link: Gastric cancer is the fifth most common and fourth deadliest cancer worldwide, with a bleak 5-year survival rate of about 20%. Despite significant research into its pathobiology, prognostic predictability remains insufficient due to pathologists' heavy workloads and the potential for diagnostic errors. Consequently, there is a pressing need for automated and precise histopathological diagnostic tools. This study leverages Machine Learning and Deep Learning techniques to classify histopathological images into healthy and cancerous categories. By utilizing both handcrafted and deep features and shallow learning classifiers on the GasHisSDB dataset, we conduct a comparative analysis to identify the most effective combinations of features and classifiers for differentiating normal from abnormal histopathological images without employing fine-tuning strategies. Our methodology achieves an accuracy of 95% with the SVM classifier, underscoring the effectiveness of feature fusion strategies. Additionally, cross-magnification experiments produced promising results with accuracies close to 80% and 90% when testing the models on unseen testing images with different resolutions
A deep architecture based on attention mechanisms for effective end-to-end detection of early and mature malaria parasites
Full text linkMalaria is a severe infectious disease caused by the Plasmodium parasite. The early and accurate detection of this disease is crucial to reducing the number of deaths it causes. However, the current method of detecting malaria parasites involves manual examination of blood smears, which is a time-consuming and labor-intensive process, mainly performed by skilled hematologists, especially in underdeveloped countries. To address this problem, we have developed two deep learning-based systems, YOLO-SPAM and YOLO-SPAM++, which can detect the parasites responsible for malaria at an early stage. Our evaluation of these systems using two public datasets of malaria parasite images, MP-IDB and IML, shows that they outperform the current state-of-the-art, with more than 11M fewer parameters than the baseline YOLOv5m6. YOLO-SPAM++ demonstrated a substantial 10% improvement over YOLO-SPAM and up to 20% against the best-performing baseline in preliminary experiments conducted on the Plasmodium Falciparum species of MP-IDB. On the other hand, YOLO-SPAM showed slightly better results than YOLO-SPAM++ in subsets without tiny parasites, while YOLO-SPAM++ performed better in subsets with tiny parasites, with precision values up to 94%. Further cross-species generalization validations, conducted by merging training sets of various species within MP-IDB, showed that YOLO-SPAM++ consistently outperformed YOLOv5 and YOLO-SPAM across all species, emphasizing its superior performance and precision in detecting tiny parasites. These architectures can be integrated into computer-aided diagnosis systems to create more reliable and robust systems for the early detection of malaria
Detection of red and white blood cells from microscopic blood images using a region proposal approach
No full textIn this paper, we propose a novel and efficient method for detecting and quantifying red and white blood cells from microscopic blood images. Laboratory tests that use a cell counter or a flow cytometer can perform a complete blood count (CBC) rapidly. Nonetheless, a manual blood smear inspection is still needed, both to have a human check on the counter results and to monitor patients under therapy. Moreover, it allows for describing the cells' appearance as well as any abnormalities. However, manual analysis is lengthy and repetitive, and its result can be subjective and error-prone. In contrast, by using image processing techniques, the proposed system is entirely automated. The main effort is devoted to both achieving high accuracy and finding a way to overcome the typical differences in the condition of blood smear images that computer-aided methods encounter. It is based on the Edge Boxes method, which is considered a state-of-art region proposal approach. By incorporating knowledge-based constraints into the detection process using Edge Boxes, we can find cell proposals rapidly and efficiently. We tested the proposed approach on the Acute Lymphoblastic Leukaemia Image Database (ALL-IDB), a well-known public dataset proposed for leukaemia detection, and the Malaria Parasite Image Database (MP-IDB), a recently proposed dataset for malaria detection. Experimental results were excellent in both cases, outperforming the state-of-the-art on ALL-IDB and creating a strong baseline on MP-IDB, demonstrating that the proposed method can work well on different datasets and different types of images
An Open Source Plugin for Image Analysis in Biology
No full textImage analysis is an important tool for several application fields, like biology and especially botany. Analysis of seed fossils can provide important information about their evolution, on agriculture origin, on plants domestication and knowledge of diets in ancient times. The aim of this work is to make the analysis process simple for biologists, by obtaining all the features needed for botanist user through a unique framework, that is still not available at the moment. We propose an ImageJ plugin able to extract morphological, textural and color features from seeds images in order to use them for classification. The experimental results have confirmed the goodness and correctness of the extracted features, making the proposed framework easily extendable to other application domains
YOLO-PAM: Parasite-Attention-Based Model for Efficient Malaria Detection
No full textMalaria is a potentially fatal infectious disease caused by the Plasmodium parasite. The mortality rate can be significantly reduced if the condition is diagnosed and treated early. However, in many underdeveloped countries, the detection of malaria parasites from blood smears is still performed manually by experienced hematologists. This process is time-consuming and error-prone. In recent years, deep-learning-based object-detection methods have shown promising results in automating this task, which is critical to ensure diagnosis and treatment in the shortest possible time. In this paper, we propose a novel Transformer- and attention-based object-detection architecture designed to detect malaria parasites with high efficiency and precision, focusing on detecting several parasite sizes. The proposed method was tested on two public datasets, namely MP-IDB and IML. The evaluation results demonstrated a mean average precision exceeding 83.6% on distinct Plasmodium species within MP-IDB and reaching nearly 60% on IML. These findings underscore the effectiveness of our proposed architecture in automating malaria parasite detection, offering a potential breakthrough in expediting diagnosis and treatment processes
On The Potential of Image Moments for Medical Diagnosis
Full text linkMedical imaging is widely used for diagnosis and postoperative or post-therapy monitoring. The ever-increasing number of images produced has encouraged the introduction of automated methods to assist doctors or pathologists. In recent years, especially after the advent of convolutional neural networks, many researchers have focused on this approach, considering it to be the only method for diagnosis since it can perform a direct classification of images. However, many diagnostic systems still rely on handcrafted features to improve interpretability and limit resource consumption. In this work, we focused our efforts on orthogonal moments, first by providing an overview and taxonomy of their macrocategories and then by analysing their classification performance on very different medical tasks represented by four public benchmark data sets. The results confirmed that convolutional neural networks achieved excellent performance on all tasks. Despite being composed of much fewer features than those extracted by the networks, orthogonal moments proved to be competitive with them, showing comparable and, in some cases, better performance. In addition, Cartesian and harmonic categories provided a very low standard deviation, proving their robustness in medical diagnostic tasks. We strongly believe that the integration of the studied orthogonal moments can lead to more robust and reliable diagnostic systems, considering the performance obtained and the low variation of the results. Finally, since they have been shown to be effective on both magnetic resonance and computed tomography images, they can be easily extended to other imaging techniques
Radio DINO: A foundation model for advanced radiomics and AI-driven medical imaging analysis
Full text linkRadiomics is transforming medical imaging by extracting complex features that enhance disease diagnosis, prognosis, and treatment evaluation. However, traditional approaches face significant challenges, such as the need for manual feature engineering, high dimensionality, and limited sample sizes. This paper presents Radio DINO, a novel family of deep learning foundation models that leverage self-supervised learning (SSL) techniques from DINO and DINOV2, pretrained on the RadImageNet dataset. The novelty of our approach lies in (1) developing Radio DINO to capture rich semantic embeddings, enabling robust feature extraction without manual intervention, (2) demonstrating superior performance across various clinical tasks on the MedMNISTv2 dataset, surpassing existing models, and (3) enhancing the interpretability of the model by providing visualizations that highlight its focus on clinically relevant image regions. Our results show that Radio DINO has the potential to democratize advanced radiomics tools, making them accessible to healthcare institutions with limited resources and ultimately improving diagnostic and prognostic outcomes in radiology
An Empirical Evaluation of Convolutional Networks for Malaria Diagnosis
No full textMalaria is a globally widespread disease caused by parasitic protozoa transmitted to humans by infected female mosquitoes of Anopheles. It is caused in humans only by the parasite Plasmodium, further classified into four different species. Identifying malaria parasites is possible by analysing digital microscopic blood smears, which is tedious, time-consuming and error prone. So, automation of the process has assumed great importance as it helps the laborious manual process of review and diagnosis. This work focuses on deep learning-based models, by comparing off-the-shelf architectures for classifying healthy and parasite-affected cells, by investigating the four-class classification on the Plasmodium falciparum stages of life and, finally, by evaluating the robustness of the models with cross-dataset experiments on two different datasets. The main contributions to the research in this field can be resumed as follows: (i) comparing off-the-shelf architectures in the task of classifying healthy and parasite-affected cells, (ii) investigating the four-class classification on the P. falciparum stages of life and (iii) evaluating the robustness of the models with cross-dataset experiments. Eleven well-known convolutional neural networks on two public datasets have been exploited. The results show that the networks have great accuracy in binary classification, even though they lack few samples per class. Moreover, the cross-dataset experiments exhibit the need for some further regulations. In particular, ResNet-18 achieved up to 97.68% accuracy in the binary classification, while DenseNet-201 reached 99.40% accuracy on the multiclass classification. The cross-dataset experiments exhibit the limitations of deep learning approaches in such a scenario, even though combining the two datasets permitted DenseNet-201 to reach 97.45% accuracy. Naturally, this needs further investigation to improve the robustness. In general, DenseNet-201 seems to offer the most stable and robust performance, offering as a crucial candidate to further developments and modifications. Moreover, the mobile-oriented architectures showed promising and satisfactory performance in the classification of malaria parasites. The obtained results enable extensive improvements, specifically oriented to the application of object detectors for type and stage of life recognition, even in mobile environments
Blob detection and deep learning for leukemic blood image analysis
No full textIn microscopy, laboratory tests make use of cell counters or flow cytometers to perform tests on blood cells, like the complete blood count, rapidly. However, a manual blood smear examination is still needed to verify the counter results and to monitor patients under therapy. Moreover, the manual inspection permits the description of the cells' appearance, as well as any abnormalities. Unfortunately, manual analysis is long and tedious, and its result can be subjective and error-prone. Nevertheless, using image processing techniques, it is possible to automate the entire workflow, both reducing the operators' workload and improving the diagnosis results. In this paper, we propose a novel method for recognizing white blood cells from microscopic blood images and classify them as healthy or affected by leukemia. The presented system is tested on public datasets for leukemia detection, the SMC-IDB, the IUMS-IDB, and the ALL-IDB. The results are promising, achieving 100% accuracy for the first two datasets and 99.7% for the ALL-IDB in white cells detection and 94.1% in leukemia classification, outperforming the state-of-the-art
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