177,658 research outputs found
The challenge of proving the existence of metazoan life in permanently anoxic deep-sea sediments
No full textThe demonstration of the existence of metazoan life in absence of free oxygen is one of the most fascinating and difficult challenges in biology. Danovaro et al. (2010) discovered three new species of the Phylum Loricifera, living in the anoxic sediments of the L’Atalante, a deep-hypersaline anoxic basin of the Mediterranean Sea. Multiple and independent analyses based on staining, incorporation of radio labeled substrates, CellTracker Green incorporation experiments and ultra-structure analyses, allowed Danovaro et al. (2010) to conclude that these animals were able to spend their entire life cycle under anoxic conditions. Bernhard et al. (2015) investigated the same basin. Due to technical difficulties in sampling operations, they could not collect samples from the permanently anoxic sediment, and sampled only the redoxcline portion of the L’Atalante basin. They found ten individuals of Loricifera and provided alternative interpretations of the results of Danovaro et al. (2010). Here we analyze these interpretations, and present additional evidence indicating that the Loricifera encountered in the anoxic basin L’Atalante were actually alive at the time of sampling. We also discuss the reliability of different methodologies and approaches in providing evidence of metazoans living in anoxic conditions, paving the way for future investigation
Ecomanagement of biodiversity and ecosystem functioning in the Mediterranean Sea: concerns and strategies
No full textMarine biodiversity is generally higher in benthic than in pelagic systems, and in coastal than in open sea systems. Sediments are the most human-impacted domain and therefore represent the target zone for both the study and actions needed for the preservation of biodiversity. Losses of marine diversity, higher (or simply more evident) in coastal areas, are generally the result of conflicting uses of coastal habitats. Large difficulties arise from the analysis and evaluation of the actual biodiversity, especially when different environments are compared, as often studies on biodiversity are dependent upon the distribution of the specialists. On the other hand, losses of marine biodiversity might be underestimated, due to the limited knowledge of the ecosystems' functioning, of the species inhabiting various habitats and of the still limited capacity to assess microbial biodiversity, which represents the largest fraction of the global marine biodiversity. Finally, claimed losses of biodiversity might be just apparent, as the sea floor is a bank of resting stages of various plankton species that are likely to spend even decades in the sediment before reactivating and inducing unattended blooms in the water column. The Mediterranean Sea displays high species diversity, but might reach the highest values in terms of adaptive strategies and functional diversity. Moreover, the Mediterranean Sea represents also a key area for the study of the relative influences of the natural and anthropogenic changes on biodiversity and its consequences on ecosystem functioning. Habitat destruction, over-fishing, contaminants, eutrophication, introduction of alien species, and climate changes are producing increasingly evident changes in community structure and biodiversity of this warm and miniature ocean. We summarized the main effects of different disruptive agents on the marine biodiversity of the Mediterranean Sea, with special attention on the biodiversity relevance in ecosystem functioning and possible implications in bio-geochemical cycles. The present overview aims at focusing and synthesizing the most important factors potentially affecting the interactions between biodiversity and ecosystem functioning in the Mediterranean in order to better define possible strategies of conservation and eco-management
Exergy, ecosystem functioning, and efficiency in a coastal lagoon: the role of auxiliary energy
No full textExergy, as the sum of energy and information contained in a given system due to living organisms, can act as a quality indicator of ecosystems. Here, we investigated the exergy of Marsala Lagoon (Mediterranean Sea), along with microbial (prokaryotic and heterotrophic nanobenthos) biomass, prokaryotic heterotrophic production and extracellular enzymatic activities, and the biochemical composition of sediment organic matter. The aim of the study was to assess the role of auxiliary energy (e.g. hydrodynamic stress) in the ecosystem functioning and efficiency of a 'detritus sink' lagoon. Samples were collected at sites characterized by contrasting hydrodynamic and trophic conditions. Exergy transfer through the benthic microbial loop was influenced by two main factors: (1) organic matter bioavailability; and (2) hydrodynamic forcing. At both sites, the values of total exergy were higher in summer than in winter, and the specific exergy decreased from winter to autumn, along with increasing auxiliary energy. Our data indicate that in coastal 'detritus sink' systems, auxiliary energy sources can have a crucial role in exergy transfer and ecosystem functioning through modifying the efficiency of transfer to higher trophic levels of the refractory organic detritus, which is otherwise lost by burial in the sediment. As coastal lagoons are often intensively modified by human activities, we conclude that maintenance of the natural hydrodynamic regimes is a key factor in the preservation of the functioning of lagoon ecosystems and of their provision of goods and services to human
The first metazoa living in permanently anoxic conditions
No full textAbstract Background Several unicellular organisms (prokaryotes and protozoa) can live under permanently anoxic conditions. Although a few metazoans can survive temporarily in the absence of oxygen, it is believed that multi-cellular organisms cannot spend their entire life cycle without free oxygen. Deep seas include some of the most extreme ecosystems on Earth, such as the deep hypersaline anoxic basins of the Mediterranean Sea. These are permanently anoxic systems inhabited by a huge and partly unexplored microbial biodiversity. Results During the last ten years three oceanographic expeditions were conducted to search for the presence of living fauna in the sediments of the deep anoxic hypersaline L'Atalante basin (Mediterranean Sea). We report here that the sediments of the L'Atalante basin are inhabited by three species of the animal phylum Loricifera (Spinoloricus nov. sp., Rugiloricus nov. sp. and Pliciloricus nov. sp.) new to science. Using radioactive tracers, biochemical analyses, quantitative X-ray microanalysis and infrared spectroscopy, scanning and transmission electron microscopy observations on ultra-sections, we provide evidence that these organisms are metabolically active and show specific adaptations to the extreme conditions of the deep basin, such as the lack of mitochondria, and a large number of hydrogenosome-like organelles, associated with endosymbiotic prokaryotes. Conclusions This is the first evidence of a metazoan life cycle that is spent entirely in permanently anoxic sediments. Our findings allow us also to conclude that these metazoans live under anoxic conditions through an obligate anaerobic metabolism that is similar to that demonstrated so far only for unicellular eukaryotes. The discovery of these life forms opens new perspectives for the study of metazoan life in habitats lacking molecular oxygen.</p
Biodiversity and ecosystem functioning in coastal lagoons: does microbial diversity play any role?
No full textAlthough prokaryotes are small in size, they are a significant biomass component in aquatic ecosystems and play a major role in biogeochemical processes. It is generally assumed that the relative importance of prokaryotes to material and energy fluxes is maximized in low-productivity (oligotrophic) ecosystems and decreases in high-productivity (eutrophic) ecosystems. Lagoon and coastal ecosystems are extremely dynamic, typically highly productive and dominated by macro-size organisms (both macrofauna and macrophytes). As such, their functional characteristics are typically evaluated from a "macrobial" perspective. An efficient ecosystem functioning, with fast nutrient cycling, high productivity, low C accumulation and lack of hypoxic/dystrophic crises is, however, intimately dependent on the interaction between microbial and macrobial organisms. We make here an attempt to relate prokaryote biodiversity (genotype richness, using fingerprinting techniques, ARISA) and ecosystem functioning (using a series of parameters including meiofaunal biomass, prokaryote C production and organic matter turnover rates) in different Mediterranean lagoon systems. The lagoons differed significantly with each other for all the variables. While no relationships were observed between the environmental characteristics of the lagoons and the bacterial diversity, the latter was significantly and positively correlated with the functioning and efficiency of the lagoons. The investigation of the links between microbial diversity and functioning in lagoons is still at its infancy, but these preliminary results suggest that a better understanding of the role of prokaryote diversity on ecosystem functioning and efficiency could open new perspectives for the conservation and management of these highly productive and vulnerable ecosystems
The trophic biology of the holothurian Molpadia musculus: implications for organic matter cycling and ecosystem functioning in a deep submarine canyon
No full textMegafaunal organisms play a key role in ecosystem functioning in the deep-sea through bioturbation, bioirrigation and organic matter cycling. At 3500 m water depth in the Nazaré Canyon, NE Atlantic, very high abundances of the infaunal holothurian Molpadia musculus were observed. To quantify the role of M. musculus in sediment cycling, sediment samples and holothurians were collected using an ROV and in situ experiments were conducted with incubation chambers. The biochemical composition of the sediment (in terms of proteins, carbohydrates and lipids), the holothurians' gut contents and holothurians' faecal material were analysed. In the sediments, proteins were the dominant organic compound, followed by carbohydrates and lipids. In the holothurian's gut contents, protein concentrations were higher than the other compounds, decreasing significantly as the material passed through the digestive tract. Approximately 33±1% of the proteins were digested by the time sediment reached the mid gut, with a total digestion rate equal to 67±1%. Carbohydrates and lipids were ingested in smaller amounts and digested with lower efficiencies (23±11% and 50±11%, respectively). As a result, the biopolymeric C digestion rate was on average 62±3%. We estimated that the population of M. musculus could remove approximately 0.49±0.13 g biopolymeric C and 0.13±0.03 g N m?2 d?1 from the sediments. These results suggest that M. musculus plays a key role in the benthic tropho-dynamics and biogeochemical processes in the Nazaré Canyon.<br/
Cosmopolitism, rareness and endemism in deep-sea marine nematodes
No full textNematodes represent the most abundant benthic metazoan of all seas and oceans, and their relative importance increases with increasing water depth. Understanding the biodiversity patterns of this dominant phylum could be a critical step towards our comprehension of the evolutionary patterns across the largest biome of the biosphere. For instance, it has been assumed for a long time that nematodes are ubiquitous across depths, latitudes and biogeographic regions, but there is still little scientific evidence for this lack of endemism. The present study is based on a meta-analysis of nematode biodiversity data collected from 246 deep-sea sites of the Atlantic Ocean and Mediterranean Sea. We explored the cosmopolitanism, rareness and potential endemism of nematode genera in deep-sea sediments. The results of this analysis indicate that only one-third of nematode families are widely distributed and could potentially be cosmopolitan, whereas 94% of the nematode genera are linked to specific habitats or bathymetric ranges. Singleton nematode genera (i.e. genera presenting as a single individual only in one specific habitat) increased in importance with increasing water depth. We conclude that rareness and endemism may be a far more common feature than previously thought in deep-sea nematode assemblages and hypothesise that the deep ocean interior could be a huge reservoir of endemic nematode species
Sediment resuspension effects on the benthic microbial loop in experimental microcosm
No full textSediment resuspension induced by anthropogenic disturbance is becoming a major threat of marine coastal ecosystems worldwide. The effects of sediment resuspension on the pelagic domain and on macro- and meiobenthos are well documented in the literature, whereas the effects on the benthic microbial components are nearly neglected. We have investigated the effects of sediment resuspension at two different disturbance levels on benthic bacterial abundance, biomass, and activities and on heterotrophic nanobenthos abundance in experimental microcosms. The results of our experiments pointed out that, independently from the amount of involved energy, sediment resuspension determined a general decrease of all benthic microbial components. The main effects consisted of a decreased abundance of the metabolically active bacterial fraction and of heterotrophic nanobenthos abundance. However, the amount of energy involved in sediment resuspension had differential effects on the structure and functioning of the benthic microbial loop, but only in the short term (i.e., within 36 h). Sediment resuspension had a stimulatory effect on activities of surviving bacterial cells, which, in turn, resulted in increased sediment organic C turnover rates. We hypothesize that such an effect, enhancing nutrient availability, might have relevant consequences on the trophic state of coastal marine ecosystem
Enzymatic activities of epiphytic and benthic thraustochytrids involved in organic matter degradation
No full textThraustochytrids are marine osmo-heterotrophic protists which have been isolated from different habitats and substrates. These organisms are typically encountered in association with refractory substrates, but the extent of their role in organic matter decomposition is still unknown. We isolated 11 thraustochytrid strains from different substrates and tested all species for their potential constitutive ecto- (cell-surface associated) and exo- (free released) enzymatic activities. Our results indicate that the investigated strains exhibited a wide spectrum of enzymes involved in the hydrolysis of all classes of organic compounds, suggesting that thraustochytrids are capable of degrading a large variety of substrates. The enzymatic pools were similar among all strains, and exhibited a good production of lipase, a selection of protease and a poor pool of carbohydrate degradation enzymes. However, different isolates displayed different spectra and intensities of enzymatic activities. The comparison of enzymatic activities of 2 thraustochytrid strains and the total enzymatic activities measured in their natural substrates suggested that thraustochytrids, although representing a minor fraction of the total benthic microbial biomass, are contributors to the degradation of highly refractory organic compounds
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