2,683 research outputs found
TAIR functional annotation data
No full textQuarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org)
The contents of the compressed archive include the following files which are described in detail in the included README file.
1.ATH_GO_GOSLIM.txt.gz
This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and >40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO.
Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11.
2.gene_aliases_yyyymmdd.txt(.gz)
This file lists alternative names for each gene.
3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz
This file contains links between loci, germplasms, and phenotypes.
4.Locus_Published_yyyymmdd.txt.gz
This file contains links between loci and publications.
5.po_temporal_gene_arabidopsis_tair.assoc.gz
po_anatomy_gene_arabidopsis_tair.assoc.gz
These two files are tab-delimited files. Each contains the
set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org).
6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)
This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.
</p
TAIR functional annotation data
No full textQuarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org)
The contents of the compressed archive include the following files which are described in detail in the included README file.
1.ATH_GO_GOSLIM.txt.gz
This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and >40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO.
Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11.
2.gene_aliases_yyyymmdd.txt(.gz)
This file lists alternative names for each gene.
3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz
This file contains links between loci, germplasms, and phenotypes.
4.Locus_Published_yyyymmdd.txt.gz
This file contains links between loci and publications.
5.po_temporal_gene_arabidopsis_tair.assoc.gz
po_anatomy_gene_arabidopsis_tair.assoc.gz
These two files are tab-delimited files. Each contains the
set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org).
6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)
This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.
</p
Free energy minimization approach to penetration of resonant magnetic perturbations in tokamaks
No full textBy applying the principle of minimum free energy an analytical model for the plasma response to externally applied resonant magnetic perturbations (RMPs) is proposed. The results are compared with ATTEMPT code calculations [D. Reiser , Phys. Plasmas 16, 0042317 (2009)] and reproduce qualitatively and quantitatively the numerical results on the collisionality dependence of RMP penetration characteristics. Strong increase in the radial electric field with reduced screening at RMPs above a certain threshold is also reproduced by the model
TAIR functional annotation data
No full text<p>Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org)</p>
<p>The contents of the compressed archive include the following files which are described in detail in the included README file.</p>
<p><br>
1.ATH_GO_GOSLIM.txt.gz<br>
This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and >40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. </p>
<p>Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. </p>
<p><br>
2.gene_aliases_yyyymmdd.txt(.gz)<br>
This file lists alternative names for each gene.</p>
<p><br>
3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br>
This file contains links between loci, germplasms, and phenotypes. <br>
<br>
4.Locus_Published_yyyymmdd.txt.gz<br>
This file contains links between loci and publications. <br>
<br>
5.po_temporal_gene_arabidopsis_tair.assoc.gz<br>
po_anatomy_gene_arabidopsis_tair.assoc.gz<br>
These two files are tab-delimited files. Each contains the <br>
set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org).</p>
<p><br>
6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br>
This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
</p>
<p>7.Araport11_GFF3_genes_transposons.[DATE].gff.gz</p>
<pre>8. Araport11_GFF3_genes_transposons.MMMYYYY.gff.gz
This document is a tab-delimited file in GFF format. This document contains annotations from Araport11 genome release. Annotations in this file include information curated from recent scientific literature.
Note: This file is available starting with the 20211231 Data Release.
Column header: explanation
1. Name of the chromosome
2. Source: Name of the the data source that generated this feature (Araport11)
3. Annotation type: eg gene, mRNA etc.
4. Start position of annotation.
5. Stop position of annotation.
6. Score - A floating point value.
7. Strand information. Defined as + (forward) or - (reverse).
8. Frame - One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on.
9. Detailed annotation information with a semicolon-separated list of tag-value pairs, providing additional information about each feature, including curator summary, computational description,. etc.
9. Araport11_GTF_genes_transposons.MMMYYYY.gtf.gz
This document is a tab-delimited file in GTF format. This document contains annotations from Araport11 genome release. Annotations in this file include information curated from recent scientific literature.
Note: This file is available starting with the 20211231 Data Release.
Column header: explanation
1. Name of the chromosome
2. Source: Name of the the data source that generated this feature (Araport11)
3. Annotation type: eg gene, mRNA etc.
4. Start position of annotation.
5. Stop position of annotation.
6. Score - A floating point value.
7. Strand information. Defined as + (forward) or - (reverse).
8. Frame - One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on.
9. Detailed annotation information with a semicolon-separated list of tag-value pairs, providing additional information about each feature, including transcript_id. gene_id, Note, etc. </pre>
TAIR functional annotation data
No full text<p>Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org)</p>
<p>The contents of the compressed archive include the following files which are described in detail in the included README file.</p>
<p><br>
1.ATH_GO_GOSLIM.txt.gz<br>
This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and >40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. </p>
<p>Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. </p>
<p><br>
2.gene_aliases_yyyymmdd.txt(.gz)<br>
This file lists alternative names for each gene.</p>
<p><br>
3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br>
This file contains links between loci, germplasms, and phenotypes. <br>
<br>
4.Locus_Published_yyyymmdd.txt.gz<br>
This file contains links between loci and publications. <br>
<br>
5.po_temporal_gene_arabidopsis_tair.assoc.gz<br>
po_anatomy_gene_arabidopsis_tair.assoc.gz<br>
These two files are tab-delimited files. Each contains the <br>
set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org).</p>
<p><br>
6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br>
This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
</p>
<p>7.Araport11_GFF3_genes_transposons.[DATE].gff.gz</p>
<pre>8. Araport11_GFF3_genes_transposons.MMMYYYY.gff.gz
This document is a tab-delimited file in GFF format. This document contains annotations from Araport11 genome release. Annotations in this file include information curated from recent scientific literature.
Note: This file is available starting with the 20211231 Data Release.
Column header: explanation
1. Name of the chromosome
2. Source: Name of the the data source that generated this feature (Araport11)
3. Annotation type: eg gene, mRNA etc.
4. Start position of annotation.
5. Stop position of annotation.
6. Score - A floating point value.
7. Strand information. Defined as + (forward) or - (reverse).
8. Frame - One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on.
9. Detailed annotation information with a semicolon-separated list of tag-value pairs, providing additional information about each feature, including curator summary, computational description,. etc.
9. Araport11_GTF_genes_transposons.MMMYYYY.gtf.gz
This document is a tab-delimited file in GTF format. This document contains annotations from Araport11 genome release. Annotations in this file include information curated from recent scientific literature.
Note: This file is available starting with the 20211231 Data Release.
Column header: explanation
1. Name of the chromosome
2. Source: Name of the the data source that generated this feature (Araport11)
3. Annotation type: eg gene, mRNA etc.
4. Start position of annotation.
5. Stop position of annotation.
6. Score - A floating point value.
7. Strand information. Defined as + (forward) or - (reverse).
8. Frame - One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on.
9. Detailed annotation information with a semicolon-separated list of tag-value pairs, providing additional information about each feature, including transcript_id. gene_id, Note, etc. </pre>
Heterocyclic Chemistry – Old Science or the Forefront of Chemistry?
No full text
Oliver Reiser studied chemistry at the Universities of Hamburg, Jerusalem and Los Angeles (UCLA) and earned his Ph.D. degree from the University of Hamburg (Prof. Armin de Meijere) in 1989. After postdoctoral stays at IBM Research Center (Dr. Robert D. Miller) and Harvard University (Prof. David A. Evans), he started his independent research in 1992 at the University of Göttingen. In 1996, he moved to the University of Stuttgart as an Associate Professor and in 1997, to the University of Regensburg as Professor of Chemistry. His research group specializes in catalysis starting from renewable resources such as furans and pyrroles toward fine chemicals, natural products and drugs. He is currently serving as President of the International Society of Heterocyclic Chemistry.</jats:p
Das Datenschutzkonzept für das föderierte Frühwarnsystem im D-Grid und seine technische Umsetzung
No full textIm Projekt GIDS wird ein föderiertes Intrusion Detection System für das D- Grid konzipiert, implementiert, evaluiert und produktiv geführt. Dabei müssen zur D- Grid-weiten Erkennung von Angriffen auf Grid-Ressourcen lokale Alarmmeldungen der einzelnen Ressourcenanbieter organisationsübergreifend ausgetauscht, korreliert und u. a. zur Anzeige in einem zentralen Benutzerportal aufbereitet werden. Die dafür technisch vorhandenen Möglichkeiten werden praktisch sowohl durch restriktive In- formation-Sharing-Policies der beteiligten Organisationen als auch durch rechtliche und datenschutzrechtliche Randbedingungen eingeschränkt. In diesem Artikel werden das GIDS-Datenschutzkonzept und seine technische Umsetzung vorgestellt
TAIR functional annotation data
No full text<p>Quarterly release of curated gene function data for Arabidopsis thaliana from The Arabidopsis Information Resource (www.arabidopsis.org)</p>
<p>The contents of the compressed archive include the following files which are described in detail in the included README file.</p>
<p><br>
1.ATH_GO_GOSLIM.txt.gz<br>
This document is a tab-delimited file containing GO annotations for Arabidopsis genes annotated by TAIR and TIGR with terms from the Gene Ontology Consortium controlled vocabularies (see www.geneontology.org). This file includes an updated set of literature based annotations and >40,000 electronic annotations based upon matches to INTERPRO domains supplied by Nicola Mulder from SWISS PROT/INTERPRO. </p>
<p>Please cite this paper when using TAIR's GO annotations in your research: Berardini, TZ, Mundodi, S, Reiser, L, Huala, E, Garcia-Hernandez, M, Zhang, P, Mueller, LM, Yoon, J, Doyle, A, Lander, G, Moseyko, N, Yoo, D, Xu, I, Zoeckler, B, Montoya, M, Miller, N, Weems, D, and Rhee, SY (2004) Functional annotation of the Arabidopsis genome using controlled vocabularies. Plant Physiol. 135(2):1-11. </p>
<p><br>
2.gene_aliases_yyyymmdd.txt(.gz)<br>
This file lists alternative names for each gene.</p>
<p><br>
3.Locus_Germplasm_Phenotype_yyyymmdd.txt.gz<br>
This file contains links between loci, germplasms, and phenotypes. <br>
<br>
4.Locus_Published_yyyymmdd.txt.gz<br>
This file contains links between loci and publications. <br>
<br>
5.po_temporal_gene_arabidopsis_tair.assoc.gz<br>
po_anatomy_gene_arabidopsis_tair.assoc.gz<br>
These two files are tab-delimited files. Each contains the <br>
set of literature-based annotations of Arabidopsis genes and loci annotated at TAIR to the terms from the Plant Ontology developed by the Plant Ontology Consortium (POC, www.plantontology.org).</p>
<p><br>
6.TAIR10 or ARAPORT11_functional_descriptions_yyyymmdd.txt(.gz)<br>
This file contains functional descriptions for gene models included in either the TAIR 10 or as of 20170630 the Araport11 genome release. TAIR10/Araport11 refers to the version of the genome annotation.<br>
</p>
<p>7.Araport11_GFF3_genes_transposons.[DATE].gff.gz</p>
<pre>8. Araport11_GFF3_genes_transposons.MMMYYYY.gff.gz
This document is a tab-delimited file in GFF format. This document contains annotations from Araport11 genome release. Annotations in this file include information curated from recent scientific literature.
Note: This file is available starting with the 20211231 Data Release.
Column header: explanation
1. Name of the chromosome
2. Source: Name of the the data source that generated this feature (Araport11)
3. Annotation type: eg gene, mRNA etc.
4. Start position of annotation.
5. Stop position of annotation.
6. Score - A floating point value.
7. Strand information. Defined as + (forward) or - (reverse).
8. Frame - One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on.
9. Detailed annotation information with a semicolon-separated list of tag-value pairs, providing additional information about each feature, including curator summary, computational description,. etc.
9. Araport11_GTF_genes_transposons.MMMYYYY.gtf.gz
This document is a tab-delimited file in GTF format. This document contains annotations from Araport11 genome release. Annotations in this file include information curated from recent scientific literature.
Note: This file is available starting with the 20211231 Data Release.
Column header: explanation
1. Name of the chromosome
2. Source: Name of the the data source that generated this feature (Araport11)
3. Annotation type: eg gene, mRNA etc.
4. Start position of annotation.
5. Stop position of annotation.
6. Score - A floating point value.
7. Strand information. Defined as + (forward) or - (reverse).
8. Frame - One of '0', '1' or '2'. '0' indicates that the first base of the feature is the first base of a codon, '1' that the second base is the first base of a codon, and so on.
9. Detailed annotation information with a semicolon-separated list of tag-value pairs, providing additional information about each feature, including transcript_id. gene_id, Note, etc. </pre>
Daily sea ice lead data for Arctic and Antarctic
No full textThe data show the long-term relative sea ice lead frequencies for the Arctic (November – April 2002/03 – 2018/19) and Antarctic (April – September 2003 – 2019), respectively. The data are projected onto the coordinate grid EPSG:3413 (ARC) and ESPG:3412 (ANT) at a spatial resolution of 1 km² and are stored as NetCDF4 files.
Ice surface temperature data (MYD/MOD29 col. 6 [Hall and Riggers, 2015]) from the Moderate-Resolution Imaging Spectroradiometer (MODIS) are used to derive daily observations of sea ice leads in both polar regions. Sea ice leads are defined as significant local surface temperature anomalies and they are automatically identified during a two-stage process, including 1) the tile-based retrieval of potential sea ice leads and 2) the identification of cloud artefacts using fuzzy logic (see Reiser et al., 2020 for further details [Reiser et al., 2020]). Subsequently, all daily sea ice lead maps are combined to long-term averages showing the climatological distribution of leads in the Arctic and Antarctic, respectively. The dataset represents an update for the Arctic (Willmes & Heinemann, 2016 [Willmes and Heinemann, 2016]) and is the first for the Antarctic. These maps reveal, that multiple distinct features with increased lead frequencies are present that are related to bathymetric structures, e.g. the continental shelf break or ridges and troughs
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