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Supporting data used in the paper: Xi Chen, 2020, The LMARS based shallow-water dynamical core on generic gnomonic cubed-sphere geometry
# Simulation results of the unstaggered shallow water model
This repository contains the supporting data used in the paper: Xi Chen, 2020, The LMARS based shallow‐water dynamical core on generic gnomonic cubed‐sphere geometry, DOI: 10.1029/2020MS002280
Organization of the repository:
The tar archive with this data submission has a:
doc directory contains a README.md with information regarding naming conventions to label the model configurations for a shallow water test simulation. Additional information can also be found in README.md. Table 4 in the paper provides additional details.
The data directory contains the supporting data files (NetCDF format).Disclaimer: "This was prepared by Xi Chen under award NA18OAR4320123 from the National Oceanic and Atmospheric Administration, U.S. Department of Commerce. The statements, findings, conclusions, and recommendations are those of the author(s) and do not necessarily reflect the views of the National Oceanic and Atmospheric Administration, or the U.S. Department of Commerce.
The urban geology of Hong Kong
published_or_final_versionPreface vContributors xiThe role of the geological model in the urban development of Hong Kong C.J.N. Fletcher, S.D.G. Campbell, P.A. Kirk, S. Parry, R.J. Sewell, X.C. Li, K.W. Lai and Y.S. Liu Fletcher, C. J. N. Campbell, S. D. G. Kirk, P. A. Sewell, R. J. Li, X. C. Lai, K. W. Liu, Y. S. 1The contribution of geology to the engineering of Hong Kong International Airport Pinches, G. Tosen, R. Thompson, J. 21Anticipating geotechnical problems S. Hencher and G. Daughton Hencher, S. Daughton, G. 43Managing ground risks C.M. Tse Tse, C. M. 63Scarp morphology and development associated with a large compound retrogressive landslide at Lai Ping Road, Hong Kong N.P. Koor, S.D.G. Campbell, H.W. Sun and K.K.S. Ho Koor, N. P. Campbell, S. D. G. Sun, H. W. Ho, K. K. S. 77Adverse ground conditions at Tung Chung New Town P.A. Kirk Kirk, P. A. 89Engineering geological and geomorphological aspects of the Western Foothills, Tuen Mun G.R. Taylor Taylor, G. R. 99Natural geochemistry and contamination of marine sediments in Hong Kong P.G.D. Whiteside Whiteside, P. G. D. 109The origin and variability of suspended sediment in Hong Kong's marine waters S. Parry Parry, S. 123Quarrying in Hong Kong: current and future situation T.S.K. Lam and K.L. Siu Lam, T. S. K. Siu, K. L. 141Weathering profile development over volcanic rocks in the Tuen Mun Valley, Hong Kong R.B. Owen and R. Shaw Owen, R. B. Shaw, R. 153Archaeology and geology in Hong Kong's development urban environment P. Rumball Rogers Rogers, P. Rumball 171Magnetic survey of the offshore areas of Hong Kong: results, interpretation and significance C.J.N. Fletcher, F.A. Collar and M.W.C. Lai Fletcher, C. J. N. Collar, F. A. Lai, M. W. C. 179Geophysical and radiometric properties of weathered saprolites in Hong Kong L.S. Chan and M.Q. Chen Chan, L. S. Chen, M. Q. 189Towards sustainable coastal development in Hong Kong W.W.S. Yim Yim, W. W. S. 20
hong-chen/er3t: v0.1.0
Version 0.1.0
First official public release.
Important updates from previous version (v0.0.1):
implements Mie scattering phase function;
contains examples directory that provides various mini examples;
adds command line tools of lss and lsa for effortlessly displaying dataset information of meteorological data file through a terminal - currently supports HDF4, HDF5, netCDF, and IDL sav;
includes support for libRadtran (er3t.rtm.lrt) in addition to MCARaTS (er3t.rtm.mca)
CUHK electronic theses & dissertations collection
by Chen Xi."July 2000."Thesis (Ph.D.)--Chinese University of Hong Kong, 2000.Includes bibliographical references (p. 107-112).Electronic reproduction. Hong Kong : Chinese University of Hong Kong, [2012] System requirements: Adobe Acrobat Reader. Available via World Wide Web.Mode of access: World Wide Web.Abstracts in English and Chinese
Stegana (Steganina) pianmaensis Chen & Chen, 2012, sp. nov.
Stegana (Steganina) pianmaensis sp. nov. (Figs 45–50) Diagnosis. This species is related to S. danbaensis sp. nov. in the male terminalia, but in this species: 10 th sternite slightly protruded apicolaterally (Fig. 47); aedeagus lacking serrated, minute processes on dorsal surfaces (Fig. 49). Description. Male terminalia: Epandrium roundly protruded ventrally (Fig. 45). Cercus lacking pubescence (Fig. 45). Surstylus with 8 prensisetae submedially (Fig. 46). Tenth sternite broadened, slightly protruded apico- and basolaterally (Fig. 47). Paramere with ca. 5, 6 sensilla (Figs 48, 49). Aedeagus with globular projections bearing finely serrated processes basally (Figs 48, 49), nearly heart-shaped on opening in ventral view, protruded apically (Fig. 48). Gonopods broadly round apically, not protruded dorsomedially (Fig. 50). Measurements. BL = 2.89 mm in holotype (2.93 mm in 1 Ƥ paratype), ThL = 1.76 mm (1.89 mm), WL = 3.48 mm (3.50 mm), WW = 1.48 mm (1.53 mm), arb = 8 / 6 (8 / 5–6), avd = 0.70 (0.83), adf = 1.43 (1.49), flw = 1.86 (1.86), FW/HW = 0.41 (0.43), ch/o = 0.16 (0.16), prorb = 0.90 (0.84), rcorb = 0.67 (0.65), vb = 0.40 (0.43), dcl = 0.45 (0.46), presctl = 0.50 (0.50), sctl = 1.38 (1.39), sterno = 0.88 (0.88), orbito = 1.80 (1.80), dcp = 0.26 (0.25), sctlp = 2.30 (2.20), C = 2.07 (2.17), 4 c = 1.11 (1.02), 4 v = 1.86 (1.66), 5 x = 1.46 (1.57), ac = 10.25 (10.50), M = 0.51 (0.54), C 3 F = 0.79 (0.68). Type material. Holotype 3 (SCAU, No. 120776), CHINA: Pianma, Baoshan, Yunnan, 26 ˚01’N, 98 ˚ 37 ’E, 1700 m, 12.viii. 2001, HW Chen. Paratype: CHINA: 1 Ƥ (SCAU, No. 120777), same data as holotype. Distribution. China (Yunnan). Etymology. In reference to the type locality.Published as part of Chen, Xi-Peng & Chen, Hong-Wei, 2012, Ten new species of the Stegana (Steganina) shirozui species group (Diptera, Drosophilidae) from China, pp. 24-37 in Zootaxa 3333 on page 32, DOI: 10.5281/zenodo.21543
Stegana (Steganina) psilolobosa Chen & Chen, 2008, sp. nov.
Stegana (Steganina) psilolobosa sp. nov. (Figs 19–24) Specimens examined. Holotype ɗ (SCAU, No. 120292): CHINA – labeled “Shennongjia, Hubei, 1700 m, 1.viii. 2005, on tree trunk, H.W. Chen”. Etymology. A combination of the Greek words “psilos + lobos”, referring to the medial flaps of hypandrium lacking pubescence. Diagnosis. Gonopods distinctly widely protruded dorso-medially (Fig. 24); aedeagus with 1 pair of expanded lobe-like process ventrobasally (Figs. 22, 23). Description. Some characters commonly seen in S. melanostoma sp. nov. are not referred to in the following description. Male: First flagellomere yellow on basal half, black on distal half. Clypeus almost yellow. Palpus entirely yellow. Legs white to yellowish, dark brown on fore knees, distal half of mid femur and basal half of mid tibia, distal 1 / 3 of hind femur and basal 1 / 3 of hind tibia. Fore femur with 4 long suberect setae on distal part of ventral surface. Male terminalia: Epandrium with ca. 27 setae on dorsal to posterolateral portion per side (Fig. 19). Tenth sternite protruded posteromedially, with 1 small projection ventrally (Fig. 21). Paramere with ca. 3 setulae (Figs. 22, 23). Measurements. BL = 2.74 mm; ThL = 1.55 mm; WL = 2.44 mm; WW = 0.92 mm. Indices: arb = 7 / 6, avd = 0.77, adf = 1.30, flw = 1.80, FW/HW = 0.45, ch/o = 0.12, prorb = 1.11, rcorb =?, vb = 0.44, dcl = 0.38, presctl = 0.44, sctl = 1.95, sterno = 0.95, orbito = 1.83, dcp = 0.20, sctlp = 2.00, C = 1.88, 4 c = 1.13, 4 v = 1.65, 5 x = 0.90, ac = 17.33, M = 0.37, C 3 F = 0.71. Distribution. China (Hubei).Published as part of Chen, Xi-Peng & Chen, Hong-Wei, 2008, The Stegana coleoptrata species group (Diptera: Drosophilidae) from mainland China, pp. 55-65 in Zootaxa 1891 on page 60, DOI: 10.5281/zenodo.18433
Stegana (Steganina) xishuangbanna Chen & Chen, 2012, sp. nov.
Stegana (Steganina) xishuangbanna sp. nov. (Figs 58–64) Diagnosis. This species is related to S. saigusai from Kumamoto, Japan, but clearly distinguishable from the latter by the aedeagus (in S. saigusai: aedeagal opening nearly triangular in ventral view, with longer and even tentaclelike setae). Description. Male terminalia: Epandrium strongly protruded ventrally (Fig. 58). Cercus lacking pubescence (Fig. 58). Surstylus with 5 prensisetae submedially (Fig. 59). Tenth sternite furcated basally, protruded apically (Fig. 60). Paramere with ca. 5–6 sensilla (Figs 61, 62). Aedeagus lacking minute processes, slightly rhombic on opening in ventral view (Figs 61, 62). Dorsomedial projection of gonopods with serrated, minute processes distally (Figs 63, 64). Measurements. BL = 2.40 mm in holotype (range in 23 and 2 Ƥ paratypes: 2.35–2.66 mm in 3, 2.56–2.58 mm in Ƥ), ThL = 1.34 mm (1.28–1.70 mm in 3, 1.84–1.90 mm in Ƥ), WL = 2.63 mm (2.59–3.28 mm in 3, 2.65– 2.89 mm in Ƥ), WW = 1.12 mm (1.08–1.40 mm in 3, 1.42–1.52 mm in Ƥ), arb = 8 / 6 (7 / 5–9 / 6), avd = 0.83 (0.75– 0.83), adf = 1.83 (1.50–1.86), flw = 2.00 (1.63–1.75), FW/HW = 0.43 (0.43–0.44), ch/o = 0.21 (0.20–0.26), prorb = 1.08 (1.07–1.08), rcorb = 0.83 (0.75–0.80), vb = 0.36 (0.38–0.42), dcl = 0.50 (0.46–0.52), presctl = 0.51 (0.54– 0.62), sctl = 1.20 (1.15–1.36), sterno = 0.79 (0.83), orbito = 2.00 (2.00– 2.25), dcp = 0.22 (0.18–0.21), sctlp = 1.70 (1.75 –2.00), C = 2.24 (1.79–2.13), 4 c = 0.97 (1.09–1.27), 4 v = 1.63 (1.50–1.86), 5 x = 1.50 (1.55–1.70), ac = 7.25 (7.00– 8.25), M = 0.50 (0.47–0.65), C 3 F = 0.84 (0.82–0.88). Type material. Holotype 3 (SCAU, No. 120782), CHINA: Mengyang, Xishuangbanna, Yunnan, 22 ° 20 ' N, 100 ° 54 ' E, 600 m, 14.ix. 2002, HW Chen. Paratypes: CHINA: 132 Ƥ (SCAU, Nos 120783 - 85), same data as holotype; 33 (SCAU, Nos 120786 - 88), Menglun, Xishuangbanna, Yunnan, 21 ° 41 N, 101 ° 25 E, 700 m, 17– 19.iv. 2007, HW Chen, JJ Gao; 33 (KIZ), Mengla, 21 ° 28 ' N, 101 ° 38 ' E, 600 m, Xishuangbanna, Yunnan, 21– 24.iv. 2007, HW Chen. Distribution. China (Yunnan). Etymology. The specific name means “dreamy and mystical eden” in the language of the Dai nationality in Xishuangbanna.Published as part of Chen, Xi-Peng & Chen, Hong-Wei, 2012, Ten new species of the Stegana (Steganina) shirozui species group (Diptera, Drosophilidae) from China, pp. 24-37 in Zootaxa 3333 on pages 33-34, DOI: 10.5281/zenodo.21543
Stegana (Steganina) parvispina Chen & Chen, 2012, sp. nov.
Stegana (Steganina) parvispina sp. nov. (Figs 41–44) Diagnosis. This species is similar to S. tentaculifera sp. nov. in the male terminalia, showing distinct dissimilarity in aedeagus, in this species: aedeagus with denser serrated, minute processes on ventral and dorsal surfaces, expressly about 12 irregular rows on ventral surface (Figs 43, 44). Description. Male terminalia: Epandrium slightly protruded ventrally (Fig. 41). Surstylus with 8 prensisetae submedially (Fig. 41, 42). Tenth sternite slightly protruded basolaterally. Paramere with ca. 4, 5 sensilla (Figs 43, 44). Aedeagus with globular projections bearing finely serrated processes basally, slightly round on opening in ventral view (Figs 43, 44). Gonopods round apically, not protruded dorsomedially. Measurements. BL = 3.45 mm in holotype (3.55 mm in 1 Ƥ paratype), ThL = 1.93 mm (2.03 mm), WL = 4.10 mm (3.75 mm), WW = 1.70 mm (1.75 mm), arb = 8–9 / 6 (9 / 5–6), avd = 0.70 (0.80), adf = 1.47 (1.50), flw = 1.83 (1.83), FW/HW = 0.44 (0.47), ch/o = 0.15 (0.16), prorb = 1.10 (1.15), rcorb = 0.83 (0.85), vb = 0.45 (0.47), dcl = 0.52 (0.54), sctl = 1.45 (1.57), sterno = 0.76 (0.81), orbito = 1.75 (1.80), dcp = 0.24 (0.24), sctlp = 1.78 (1.88), C = 1.92 (2.09), 4 c = 1.12 (1.09), 4 v = 1.81 (1.80), 5 x = 1.25 (1.27), ac = 9.00 (10.67), M = 0.47 (0.51), C 3 F = 0.68 (0.69). Type material. Holotype 3 (SCAU, No. 120774), CHINA: Foping, Qinling, Shaanxi, 32 ° 32 ' N, 107 ° 41 ' E, 1000 m, 6.viii. 2003, JJ Gao. Paratypes: CHINA: 1 Ƥ (SCAU, No. 120775), same data as holotype. Distribution. China (Shaanxi). Etymology. A combination of the Latin words: parvus (= small) and spina (= thorn), referring to the aedeagus with serrated processes basally.Published as part of Chen, Xi-Peng & Chen, Hong-Wei, 2012, Ten new species of the Stegana (Steganina) shirozui species group (Diptera, Drosophilidae) from China, pp. 24-37 in Zootaxa 3333 on page 31, DOI: 10.5281/zenodo.21543
Stegana (Steganina) oligochaeta Chen & Chen, 2012, sp. nov.
Stegana (Steganina) oligochaeta sp. nov. (Figs 28–34) Diagnosis. This species is related to S. protuberans sp. nov., but clearly distinguishable from the latter by the epandrium and aedeagus (in S. protuberans: epandrium not broadened on posterior margins, approximately twice as high as wide; aedeagus lacking sclerotized, round, minute processes basoventrally). Description. Male terminalia: Epandrium broadened on posterior margins, approximately 3 / 5 as high as wide, protruded ventrally (Fig. 28). Cercus with sporadic pubescence (Fig. 28). Surstylus with 8 prensisetae submedially (Fig. 29). Tenth sternite sclerotized and deeply separated basally, protruded apically (Fig. 30). Paramere with ca. 2 sensilla (Figs 31, 32). Aedeagus with scalelike, minute processes dorsally and several sclerotized, round, minute processes basoventrally, slightly semilunar on opening in ventral view (Figs 31, 32). Dorsomedial projection of gonopods with serrated, minute processes distally (Fig. 34). Measurements. BL = 2.78 mm in holotype (13 paratype 2.89 mm), ThL = 1.40 mm (1.36 mm), WL = 2.94 mm (3.09 mm), WW = 1.26 mm (1.38 mm), arb = 9 / 6 (9 / 5), avd = 0.80 (0.91), adf = 1.43 (1.38), flw = 1.86 (1.63), FW/HW = 0.48 (0.49), ch/o = 0.21 (0.24), prorb = damaged (damaged), rcorb = 0.85 (damaged), vb = 0.33 (0.40), dcl = 0.48 (0.48), presctl = 0.44 (0.45), sctl = damaged (damaged), sterno = 0.88 (0.86), orbito = 2.00 (2.25), dcp = 0.19 (0.17), sctlp = 1.78 (1.90), C = 1.97 (2.00), 4 c = 1.17 (1.06), 4 v = 1.90 (1.76), 5 x = 1.45 (1.33), ac = 11.67 (12.00), M = 0.53 (0.47), C 3 F = 0.68 (0.66). Type material. Holotype 3 (SCAU, No. 120768), CHINA: Mt. Jizu, Binchuan, Yunnan, 1900 m, 23.vii. 2006, HL Cao. Paratype: CHINA: 13 (SCAU, No. 120769), Mt. Wuliang, Nanjian, Yunnan, 25.vii. 2006, HL Cao. Distribution. China (Yunnan). Etymology. A combination of the Greek words: oligos (= few) and chaite (= bristle, seta), referring to the cercus with sporadic pubescence.Published as part of Chen, Xi-Peng & Chen, Hong-Wei, 2012, Ten new species of the Stegana (Steganina) shirozui species group (Diptera, Drosophilidae) from China, pp. 24-37 in Zootaxa 3333 on pages 29-30, DOI: 10.5281/zenodo.21543
Stegana (Steganina) protuberans Chen & Chen, 2012, sp. nov.
Stegana (Steganina) protuberans sp. nov. (Figs 51–57) Description. Male terminalia: Epandrium strongly protruded ventrally, not broadened on posterior margins, approximately twice as high as wide (Fig. 51). Cercus with sparse pubescence (Fig. 51). Surstylus with 8 prensisetae submedially (Fig. 52). Tenth sternite sclerotized and deeply separated basally, protruded apically (Fig. 53). Paramere with ca. 3 sensilla (Figs 54, 55). Aedeagus with scalelike, minute processes dorsally, slightly semilunar on opening in ventral view (Figs 54, 55). Dorsomedial projection of gonopods with serrated, minute processes distally (Fig. 57). Measurements. BL = 2.75 mm in holotype (range in 3 Ƥ paratypes: 2.22–2.80 mm), ThL = 1.40 mm (1.70– 1.84 mm), WL = 2.84 mm (3.55–3.95 mm), WW = 1.24 mm (1.48–1.54 mm), arb = 7 / 5 (7 / 5–9 / 5), avd = 0.82 (0.75–0.87), adf = 1.57 (1.50 – 1.50), flw = 1.71 (1.63–1.75), FW/HW = 0.48 (0.46–0.48), ch/o = 0.27 (0.21–0.28), prorb = 1.25 (1.25–1.26), rcorb = 0.75 (0.67–0.73), vb = 0.36 (0.40–0.47), dcl = 0.47 (0.46–0.49), presctl = damaged (0.54–0.59), sctl = 1.39 (1.40), sterno = 0.80 (0.83 –1.00), orbito = 2.00 (1.80 –2.00), dcp = 0.21 (0.18– 0.22), sctlp = 1.70 (1.69 –2.00), C = 2.00 (1.98–2.23), 4 c = 1.17 (1.00– 1.07), 4 v = 1.57 (1.70–1.80), 5 x = 1.45 (1.20–1.38), ac = 11.67 (11.00–13.00), M = 0.53 (0.45–0.47), C 3 F = 0.57 (0.64–0.69). Type material. Holotype 3 (SCAU, No. 120778, CHINA: Mt. Wulian, Nanjian, Yunnan, 2200 m, 25– 27.vii. 2006, HL Cao. Paratypes: CHINA: 3 Ƥ (SCAU, Nos 120779 - 81), same data as holotype. Distribution. China (Yunnan). Etymology. From the Latin word: protuberans (= protruding), referring to the gonopods with 1 projection dorsomedially.Published as part of Chen, Xi-Peng & Chen, Hong-Wei, 2012, Ten new species of the Stegana (Steganina) shirozui species group (Diptera, Drosophilidae) from China, pp. 24-37 in Zootaxa 3333 on pages 32-33, DOI: 10.5281/zenodo.21543
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