57 research outputs found
Sage-Bionetworks/schematic: v1.0.0
No full textImproved code coverage (~44%)
Compatibility with latest release of synapseclient
Code formatting and linting with black and flake
Sage-Bionetworks/schematic: v23.9.2
No full textWhat's Changed
<ul>
<li>implement GE list rule by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/655">https://github.com/Sage-Bionetworks/schematic/pull/655</a></li>
<li>Develop initial rule pairs by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/802">https://github.com/Sage-Bionetworks/schematic/pull/802</a></li>
<li>Cross Manifest Validation: Value Level Comparisons and Reworked Warning Messages by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/751">https://github.com/Sage-Bionetworks/schematic/pull/751</a></li>
<li>Develop schema viz tool tests by @mialy-defelice in <a href="https://github.com/Sage-Bionetworks/schematic/pull/659">https://github.com/Sage-Bionetworks/schematic/pull/659</a></li>
<li>make sorting case insensitive by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/830">https://github.com/Sage-Bionetworks/schematic/pull/830</a></li>
<li>Develop fix submit keyerror by @mialy-defelice in <a href="https://github.com/Sage-Bionetworks/schematic/pull/831">https://github.com/Sage-Bionetworks/schematic/pull/831</a></li>
<li>updating the release documentation by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/817">https://github.com/Sage-Bionetworks/schematic/pull/817</a></li>
<li>Develop an endpoint to return data types of columns in a manifest by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/815">https://github.com/Sage-Bionetworks/schematic/pull/815</a></li>
<li>Develop rule combination by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/766">https://github.com/Sage-Bionetworks/schematic/pull/766</a></li>
<li>BugFix: Import dataType from CLI as list not string by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/836">https://github.com/Sage-Bionetworks/schematic/pull/836</a></li>
<li>BugFix: Manifest Import - Mask null cells as empty strings instead of NaNs by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/837">https://github.com/Sage-Bionetworks/schematic/pull/837</a></li>
<li>BugFix: list like behavior by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/840">https://github.com/Sage-Bionetworks/schematic/pull/840</a></li>
<li>Check type of 'url' entry when raising errors by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/844">https://github.com/Sage-Bionetworks/schematic/pull/844</a></li>
<li>Fix example data model list validation rule and update "list" in ManifestGenerator to handle both list strict and list like by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/847">https://github.com/Sage-Bionetworks/schematic/pull/847</a></li>
<li>add warning to validate_manifest endpoint by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/859">https://github.com/Sage-Bionetworks/schematic/pull/859</a></li>
<li>Develop NA string behavior by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/842">https://github.com/Sage-Bionetworks/schematic/pull/842</a></li>
<li>Develop blank annotation behavior by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/862">https://github.com/Sage-Bionetworks/schematic/pull/862</a></li>
<li>Develop Missing Entity Handling by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/871">https://github.com/Sage-Bionetworks/schematic/pull/871</a></li>
<li>rename manifest based on manifest_basename when submit to synapse by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/869">https://github.com/Sage-Bionetworks/schematic/pull/869</a></li>
<li>Output errors generated from jsonSchema (when submitting manifest) to the console by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/873">https://github.com/Sage-Bionetworks/schematic/pull/873</a></li>
<li>Develop manifest submission error handle by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/879">https://github.com/Sage-Bionetworks/schematic/pull/879</a></li>
<li>do not create dir if located in cwd by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/881">https://github.com/Sage-Bionetworks/schematic/pull/881</a></li>
<li>Update annotations unit test by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/880">https://github.com/Sage-Bionetworks/schematic/pull/880</a></li>
<li>Develop optional rule args by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/843">https://github.com/Sage-Bionetworks/schematic/pull/843</a></li>
<li>Containerizing schematic (and update dependencies as needed) by @BrunoGrandePhD in <a href="https://github.com/Sage-Bionetworks/schematic/pull/882">https://github.com/Sage-Bionetworks/schematic/pull/882</a></li>
<li>add endpoint find_class_specific_properties by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/890">https://github.com/Sage-Bionetworks/schematic/pull/890</a></li>
<li>add route get_subgraph_by_edge_type by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/891">https://github.com/Sage-Bionetworks/schematic/pull/891</a></li>
<li>create endpoint to return schema as a pickle file by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/892">https://github.com/Sage-Bionetworks/schematic/pull/892</a></li>
<li>poetry documentation by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/895">https://github.com/Sage-Bionetworks/schematic/pull/895</a></li>
<li>Add support for Schematic API to Dockerfile by @BrunoGrandePhD in <a href="https://github.com/Sage-Bionetworks/schematic/pull/887">https://github.com/Sage-Bionetworks/schematic/pull/887</a></li>
<li>Create project table manifests, move entities to new project by @mialy-defelice in <a href="https://github.com/Sage-Bionetworks/schematic/pull/829">https://github.com/Sage-Bionetworks/schematic/pull/829</a></li>
<li>add concurrency to github action by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/896">https://github.com/Sage-Bionetworks/schematic/pull/896</a></li>
<li>HOTFIX: Mixed type column manifest table upload by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/902">https://github.com/Sage-Bionetworks/schematic/pull/902</a></li>
<li>update asset view table endpoint to allow returning a json by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/912">https://github.com/Sage-Bionetworks/schematic/pull/912</a></li>
<li>added get_node_range endpoint by @andrewelamb in <a href="https://github.com/Sage-Bionetworks/schematic/pull/904">https://github.com/Sage-Bionetworks/schematic/pull/904</a></li>
<li>added get_property_label endpoint by @andrewelamb in <a href="https://github.com/Sage-Bionetworks/schematic/pull/905">https://github.com/Sage-Bionetworks/schematic/pull/905</a></li>
<li>added node_dependencies endpoint by @andrewelamb in <a href="https://github.com/Sage-Bionetworks/schematic/pull/906">https://github.com/Sage-Bionetworks/schematic/pull/906</a></li>
<li>Allow schema.org schema to be loaded and used by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/903">https://github.com/Sage-Bionetworks/schematic/pull/903</a></li>
<li>add example workbook to demo cli functions by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/916">https://github.com/Sage-Bionetworks/schematic/pull/916</a></li>
<li>change manifest name for censored manifest when upload by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/931">https://github.com/Sage-Bionetworks/schematic/pull/931</a></li>
<li>Add Restriction Flag to Make Synapse Table Method by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/935">https://github.com/Sage-Bionetworks/schematic/pull/935</a></li>
<li>Develop Table Uploads: Replace by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/917">https://github.com/Sage-Bionetworks/schematic/pull/917</a></li>
<li>allow users to upload csv or json file when submitting manifest using API endpoints by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/908">https://github.com/Sage-Bionetworks/schematic/pull/908</a></li>
<li>allow users to upload csv or json file when validating manifest using API endpoints by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/910">https://github.com/Sage-Bionetworks/schematic/pull/910</a></li>
<li>Develop table schema fix replacements by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/947">https://github.com/Sage-Bionetworks/schematic/pull/947</a></li>
<li>Fixing parsing of table schema parameters on table replace by @milen-sage in <a href="https://github.com/Sage-Bionetworks/schematic/pull/945">https://github.com/Sage-Bionetworks/schematic/pull/945</a></li>
<li>Develop schema viz tool cors by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/942">https://github.com/Sage-Bionetworks/schematic/pull/942</a></li>
<li>Move Schema Visualization to Schematic by @mialy-defelice in <a href="https://github.com/Sage-Bionetworks/schematic/pull/645">https://github.com/Sage-Bionetworks/schematic/pull/645</a></li>
<li>add default max size for columns missing this key by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/952">https://github.com/Sage-Bionetworks/schematic/pull/952</a></li>
<li>populate manifest as an excel spreadsheet without sending data to Google api by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/940">https://github.com/Sage-Bionetworks/schematic/pull/940</a></li>
<li>Skip Trashed Entities and Entities that "do not exist" by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/985">https://github.com/Sage-Bionetworks/schematic/pull/985</a></li>
<li>Reword conditional requirements for the attribute table by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/987">https://github.com/Sage-Bionetworks/schematic/pull/987</a></li>
<li>add tests related to <code>manifest get</code> by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/979">https://github.com/Sage-Bionetworks/schematic/pull/979</a></li>
<li>fix api endpoint for docker container by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/974">https://github.com/Sage-Bionetworks/schematic/pull/974</a></li>
<li>Remove unused libraries by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/991">https://github.com/Sage-Bionetworks/schematic/pull/991</a></li>
<li>Remove Manifest Table Submission Dependency on Project Scope when not Validating by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/989">https://github.com/Sage-Bionetworks/schematic/pull/989</a></li>
<li>HOTFIX: Extend table replacement sleep duration to ensure synapse deletion operation completes by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/999">https://github.com/Sage-Bionetworks/schematic/pull/999</a></li>
<li>Pass config.yml as an environment variable to docker container by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/975">https://github.com/Sage-Bionetworks/schematic/pull/975</a></li>
<li>update error messages in synapseStore when <code>manifest_basename</code> key is missing in config.yml by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/997">https://github.com/Sage-Bionetworks/schematic/pull/997</a></li>
<li>Added instructions for installing and using schematic and the schematic API docker containers to README by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/953">https://github.com/Sage-Bionetworks/schematic/pull/953</a></li>
<li>Develop pdoc by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/957">https://github.com/Sage-Bionetworks/schematic/pull/957</a></li>
<li>correct typo: master_basename to manifest_basename in error message by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1005">https://github.com/Sage-Bionetworks/schematic/pull/1005</a></li>
<li>Fixed typo in conditional requirement for schema viz attribute table by adding quotes by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1003">https://github.com/Sage-Bionetworks/schematic/pull/1003</a></li>
<li>Added tests for all API endpoints by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/995">https://github.com/Sage-Bionetworks/schematic/pull/995</a></li>
<li>Fixed an issue where the DCA would disconnect on manifest submission by casting UUIDs to type string by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1006">https://github.com/Sage-Bionetworks/schematic/pull/1006</a></li>
<li>Reminded users to run <code>synapse login --rememberMe</code> after schematic init step in ReadMe by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1004">https://github.com/Sage-Bionetworks/schematic/pull/1004</a></li>
<li>Added the option to populate manifest as an excel spreadsheet to avoid sending metadata to Google APIs by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/994">https://github.com/Sage-Bionetworks/schematic/pull/994</a></li>
<li>For schematic APIs, return excel file instead of excel file path by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/988">https://github.com/Sage-Bionetworks/schematic/pull/988</a></li>
<li>Emphasized that users should download the <code>config.yml</code> from develop branch in ReadMe by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1007">https://github.com/Sage-Bionetworks/schematic/pull/1007</a></li>
<li>Removed validity requirement for unrequired attribute entries, allow users to specify validation rule conformity required for entries, fix DCA disconnect caused by JSON Schema validation errors by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1000">https://github.com/Sage-Bionetworks/schematic/pull/1000</a></li>
<li>Strip hyphens from Synapse annotation keys by @milen-sage in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1020">https://github.com/Sage-Bionetworks/schematic/pull/1020</a></li>
<li>Fixed a bug where in some instances manifests would be uploaded with different display and <code>downloadAs</code> names by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1017">https://github.com/Sage-Bionetworks/schematic/pull/1017</a></li>
<li>Added an API endpoint to check if a given node is required or not by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1024">https://github.com/Sage-Bionetworks/schematic/pull/1024</a></li>
<li>added more instructions of running CLI in jupyter notebook by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1031">https://github.com/Sage-Bionetworks/schematic/pull/1031</a></li>
<li>Added a slack bot to notify successful new releases by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1025">https://github.com/Sage-Bionetworks/schematic/pull/1025</a></li>
<li>Turned <code>service_account_creds.json</code> as an environment variable and default way of authentication by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1015">https://github.com/Sage-Bionetworks/schematic/pull/1015</a></li>
<li>Changed base docker image and removed package for security reasons by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1037">https://github.com/Sage-Bionetworks/schematic/pull/1037</a></li>
<li>Add support for treating date entries as type <code>datetime</code> by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1041">https://github.com/Sage-Bionetworks/schematic/pull/1041</a></li>
<li>Automatically updated CLI documentation on Readthedocs by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1047">https://github.com/Sage-Bionetworks/schematic/pull/1047</a></li>
<li>Deprecated token pickle and credentials.json by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1040">https://github.com/Sage-Bionetworks/schematic/pull/1040</a></li>
<li>Introduce tests to cover current table operations: creation and replacement by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1046">https://github.com/Sage-Bionetworks/schematic/pull/1046</a></li>
<li>Skip api tests when rule combination tests are run by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1068">https://github.com/Sage-Bionetworks/schematic/pull/1068</a></li>
<li>Added workflow to deploy schematic docker container in Github container registry by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1062">https://github.com/Sage-Bionetworks/schematic/pull/1062</a></li>
<li>Remove schematic support for Python <code>v3.7</code> and <code>v3.8</code> by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1090">https://github.com/Sage-Bionetworks/schematic/pull/1090</a></li>
<li>Refactor table operations structure in asset store by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1069">https://github.com/Sage-Bionetworks/schematic/pull/1069</a></li>
<li>Added input_token as a parameter for /manifest/get endpoint to fix credential issues when getting an existing manifest on AWS by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1080">https://github.com/Sage-Bionetworks/schematic/pull/1080</a></li>
<li>Fixed <code>getProjectManifests</code> function in synapse storage by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1084">https://github.com/Sage-Bionetworks/schematic/pull/1084</a></li>
<li>Develop api node display names by @mialy-defelice in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1094">https://github.com/Sage-Bionetworks/schematic/pull/1094</a></li>
<li>Create API endpoint for get_node_validation_rules by @mialy-defelice in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1095">https://github.com/Sage-Bionetworks/schematic/pull/1095</a></li>
<li>Update schematic dependencies by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1092">https://github.com/Sage-Bionetworks/schematic/pull/1092</a></li>
<li>Raise <code>errors</code> for <code>wrong schema</code> errors by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1073">https://github.com/Sage-Bionetworks/schematic/pull/1073</a></li>
<li>Set default of "table_manipulation" as "replace" in API endpoint when users enter None and updated tests by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1115">https://github.com/Sage-Bionetworks/schematic/pull/1115</a></li>
<li>Update <code>synapseClient</code> dependency and api for manifest table uploads by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1101">https://github.com/Sage-Bionetworks/schematic/pull/1101</a></li>
<li>set pyopenssl = "^23.0.0" by @andrewelamb in <a href="https://g
ncihtan/data-models: v24.2.1 [Leap Day Special]
No full text<h2>What's Changed</h2>
<ul>
<li>update ignored attributes list by @clarisse-lau in https://github.com/ncihtan/data-models/pull/348</li>
<li>Create accessory component by @clarisse-lau in https://github.com/ncihtan/data-models/pull/346</li>
<li>Add accessory template to dca-template-config.json by @clarisse-lau in https://github.com/ncihtan/data-models/pull/349</li>
<li>Fix DMR calling workflow validation by @adamjtaylor in https://github.com/ncihtan/data-models/pull/342</li>
<li>Remove loops in DAG by @adamjtaylor in https://github.com/ncihtan/data-models/pull/344</li>
<li>Re-order Visium DependsOn by @adamjtaylor in https://github.com/ncihtan/data-models/pull/343</li>
<li>Refactor actions to use latest schematic (post-refactor) by @adamjtaylor in https://github.com/ncihtan/data-models/pull/351</li>
</ul>
<p><strong>Full Changelog</strong>: https://github.com/ncihtan/data-models/compare/v24.1.2...v24.2.1</p>
ncihtan/data-models: v24.5.1
No full text<h2>What's Changed</h2>
<ul>
<li>Add sf to file format by @adamjtaylor in https://github.com/ncihtan/data-models/pull/402</li>
<li>Add Xenium and CosMX to DCA template config json by @adamjtaylor in https://github.com/ncihtan/data-models/pull/401</li>
<li>Remove duplicated attributes for Xenium and CosMX by @adamjtaylor in https://github.com/ncihtan/data-models/pull/405</li>
</ul>
<p><strong>Full Changelog</strong>: https://github.com/ncihtan/data-models/compare/v24.4.1...v24.5.1</p>
ncihtan/data-models: v24.4.1
No full text<h2>What's Changed</h2>
<ul>
<li>AccessoryManifest Modifications by @clarisse-lau in https://github.com/ncihtan/data-models/pull/366</li>
<li>Update README.md link by @adamjtaylor in https://github.com/ncihtan/data-models/pull/375</li>
<li>Updating workflow to include IPython installation by @aditigopalan in https://github.com/ncihtan/data-models/pull/378</li>
<li>Publication PV and validation enhancements by @adamjtaylor in https://github.com/ncihtan/data-models/pull/376</li>
<li>374-Library-Construction-Updates by @aditigopalan in https://github.com/ncihtan/data-models/pull/385</li>
<li>384 seq platform by @aditigopalan in https://github.com/ncihtan/data-models/pull/388</li>
<li>Data Model Updates for Xenium RFC by @PozhidayevaDarya in https://github.com/ncihtan/data-models/pull/380</li>
<li>Data Model Updates for CosMx RFC by @PozhidayevaDarya in https://github.com/ncihtan/data-models/pull/379</li>
<li>Update Publication data types by @adamjtaylor in https://github.com/ncihtan/data-models/pull/391</li>
</ul>
<h2>New Contributors</h2>
<ul>
<li>@aditigopalan made their first contribution in https://github.com/ncihtan/data-models/pull/378</li>
</ul>
<p><strong>Full Changelog</strong>: https://github.com/ncihtan/data-models/compare/v24.3.1...v24.4.1</p>
Sage-Bionetworks/schematic: v23.8.1
No full textWhat's Changed
<ul>
<li>[bug fix] Updated docker file when building docker images for schematic AWS deployment by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1269">https://github.com/Sage-Bionetworks/schematic/pull/1269</a></li>
<li>update channel id to <code>fair-data-team</code> channel by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1272">https://github.com/Sage-Bionetworks/schematic/pull/1272</a></li>
<li>[bug fix] Updated manifest download endpoint to avoid querying file view by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1270">https://github.com/Sage-Bionetworks/schematic/pull/1270</a></li>
<li>[bug fix] Fixed typo in manifest generator by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1275">https://github.com/Sage-Bionetworks/schematic/pull/1275</a></li>
<li>Add API endpoint that returns the current version of schematic by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1277">https://github.com/Sage-Bionetworks/schematic/pull/1277</a></li>
<li>[bug fix] Updated .synapseCache, functions to calculate cache, and cleared manifests before each download by @linglp in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1268">https://github.com/Sage-Bionetworks/schematic/pull/1268</a></li>
<li>replace issue templates by @allaway in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1274">https://github.com/Sage-Bionetworks/schematic/pull/1274</a></li>
<li>Schematic 23.8.1 FDS-807 by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1273">https://github.com/Sage-Bionetworks/schematic/pull/1273</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a href="https://github.com/Sage-Bionetworks/schematic/compare/v23.7.1...v23.8.1">https://github.com/Sage-Bionetworks/schematic/compare/v23.7.1...v23.8.1</a></p>
ncihtan/data-models: v23.1.2
No full textWhat's Changed
<ul>
<li>HTAN model update for Visium Level 1-3 by @PozhidayevaDarya in <a href="https://github.com/ncihtan/data-models/pull/138">https://github.com/ncihtan/data-models/pull/138</a></li>
<li>Add description for RPPA level 4 by @adamjtaylor in <a href="https://github.com/ncihtan/data-models/pull/141">https://github.com/ncihtan/data-models/pull/141</a></li>
<li>Updates for name changes and validation (Visium Model Updates). by @PozhidayevaDarya in <a href="https://github.com/ncihtan/data-models/pull/142">https://github.com/ncihtan/data-models/pull/142</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a href="https://github.com/ncihtan/data-models/compare/v22.12.1...v23.1.2">https://github.com/ncihtan/data-models/compare/v22.12.1...v23.1.2</a></p>
Sage-Bionetworks/schematic: Schematic Release (v22.10.3)
No full textWhat's Changed
Skip Trashed Entities and Entities that "do not exist" by @GiaJordan in https://github.com/Sage-Bionetworks/schematic/pull/985
Reword conditional requirements for the attribute table by @linglp in https://github.com/Sage-Bionetworks/schematic/pull/987
fix api endpoint for docker container by @linglp in https://github.com/Sage-Bionetworks/schematic/pull/974
Remove Manifest Table Submission Dependency on Project Scope when not Validating by @GiaJordan in https://github.com/Sage-Bionetworks/schematic/pull/989
Schematic Release v22.10.3 by @linglp in https://github.com/Sage-Bionetworks/schematic/pull/990
Full Changelog: https://github.com/Sage-Bionetworks/schematic/compare/v22.10.2...v22.10.
Sage-Bionetworks/schematic: v23.9.3
No full textWhat's Changed
<ul>
<li>BugFix: <code>is_class_in_schema</code> no longer errors out when a class is not in schema by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1287">https://github.com/Sage-Bionetworks/schematic/pull/1287</a></li>
<li>BugFix: Fix error when <code>use_annotations=True</code> for record based metadata where there are no existing annotations by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1285">https://github.com/Sage-Bionetworks/schematic/pull/1285</a></li>
<li>Bug Fix: Adding annotations to files with -mrt file_only parameter by @mialy-defelice in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1290">https://github.com/Sage-Bionetworks/schematic/pull/1290</a></li>
<li>Develop markers for api tests according to credentials required FDS-1026 by @GiaJordan in <a href="https://github.com/Sage-Bionetworks/schematic/pull/1289">https://github.com/Sage-Bionetworks/schematic/pull/1289</a></li>
</ul>
<p><strong>Full Changelog</strong>: <a href="https://github.com/Sage-Bionetworks/schematic/compare/v23.9.2...v23.9.3">https://github.com/Sage-Bionetworks/schematic/compare/v23.9.2...v23.9.3</a></p>
- …
