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A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria
No full textKo, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong, Lee, Soon Dong (2017): A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria. Journal of Species Research 6 (1): 1-14, DOI: 10.12651/JSR.2017.6.1.00
A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea
No full textJung, Hye Su, Yoon, Jung-Hoon, Joh, Kiseong, Seong, Chi-Nam, Kim, Won-Yong, Im, Wan-Taek, Kim, Myung-Kyum, Cha, Chang-Jun, Kim, Seung-Bum, Jeon, Che-Ok (2021): A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea. Journal of Species Research 10 (1): 12-22, DOI: 10.12651/JSR.2021.10.1.01
Deinococcus xinjiangensis
No full textDescription of Deinococcus xinjiangensis 6004 Cells are gram-staining-positive, non-flagellated, and cocci-shaped. Colonies are circular, entire, smooth, raised, and pink colored after 2 days of incubation at 30°C on R2A. Positive for urease and gelatinase activities. Negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, esculin hydrolysis, and β -galactosidase activity. Does not utilize L-arabinose, D-mannitol, N-acetyl-glucosamine, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate, and phenylacetic acid. Strain 6004 (= NIBR BAC000498565) was isolated from a sediment soil sample, Han River, Korea.Published as part of Kim, Dong-Uk, Kim, Ju-Young, Cha, Chang-Jun, Kim, Wonyong & Kim, Myung Kyum, 2018, A report of unrecorded bacterial species of Korea isolated in 2016, belonging to the family Deinococcaceae and Planctomycetaceae, pp. 9-12 in Journal of Species Research 7 (1) on page 11, DOI: 10.12651/JSR.2018.7.1.009, http://zenodo.org/record/812042
Report on 31 unrecorded bacterial species in Korea that belong to the phylum Actinobacteria
No full textChoi, Jung-Hye, Cha, Ju-Hee, Bae, Jin-Woo, Cho, Jang-Cheon, Chun, Jongsik, Im, Wan-Taek, Jahng, Kwang Yeop, Jeon, Che Ok, Joh, Kiseong, Kim, Seung Bum, Seong, Chi Nam, Yoon, Jung-Hoon, Cha, Chang-Jun (2016): Report on 31 unrecorded bacterial species in Korea that belong to the phylum Actinobacteria. Journal of Species Research 5 (1): 1-13, DOI: 10.12651/JSR.2016.5.1.001, URL: http://dx.doi.org/10.12651/jsr.2016.5.1.00
Blastopirellula cremea
No full textDescription of <i>Blastopirellula cremea</i> CAU 1293 <p> Cells are gram-staining-positive, flagellated, and cocci-shaped. Colonies are circular, convex, entire margins, and yellow colored after 3 days of incubation at 30°C on MA. Positive for esculin hydrolysis, gelatinase, and <i>β</i> -galactosidase activity. Negative for nitrate reduction, indole production, glucose fermentation, argentine dihydrolase, and urease activities. Does not utilize D-mannose, N-acetyl-glucosamine, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate, and phenylacetic acid. Strain CAU 1293 (<b>=</b> NIBR BAC000498500) was isolated from a sea sand sample, Jeju, Korea.</p>Published as part of <i>Kim, Dong-Uk, Kim, Ju-Young, Cha, Chang-Jun, Kim, Wonyong & Kim, Myung Kyum, 2018, A report of unrecorded bacterial species of Korea isolated in 2016, belonging to the family Deinococcaceae and Planctomycetaceae, pp. 9-12 in Journal of Species Research 7 (1)</i> on page 11, DOI: 10.12651/JSR.2018.7.1.009, <a href="http://zenodo.org/record/8120429">http://zenodo.org/record/8120429</a>
Impact of contrasting poultry exposures on human, poultry, and wastewater antibiotic resistomes in Bangladesh
Get PDFInteractions between humans, animals, and the environment are considered critical foci for addressing antimicrobial resistance (AMR). However, One Health data on AMR in low- and middle-income countries are presently scarce. Using metagenomics, we investigated whether and how the fecal antibiotic resistomes of humans are influenced by exposure to intensive and non-intensively reared poultry within contrasting settings of urban wet markets (n = 13) and rural households (n = 7) in Bangladesh. We also considered poultry (n = 10) and wastewater (n = 10) resistomes in these settings. We found that occupational poultry exposures did not significantly alter the human fecal resistome. In contrast, macrolide-lincosamide-streptogramin and streptothricin antibiotic resistance genes (ARGs) were enriched in poultry from urban wet markets relative to rural household chickens. Wastewater had the highest ARG richness, though this was only partially explained by poultry cecal and human fecal sources. Wastewater also contained clinically significant carbapenem ARGs. This study therefore provides critical insight into the distribution of ARGs in Bangladesh
Fig. 4 in A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria
No full textFig. 4. Neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the relationships between the strains isolated in this study and their relatives of the orders Propionibacteriales, Pseudonocardiales, Streptomycetales and Streptosporangiales in the class Actinobacteria. Bootstrap values (>70%) are shown at the branching points. Asterisks indicate that the corresponding branches were also recovered in both the maximum-likelihood and maximum-parsimony trees. Bar, 0.02 substitutions per nucleotide position.Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 7, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/812037
Fig. 2. A in A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea
No full textFig. 2. A neighbor-joining phylogenetic tree, based on 16S rRNA gene sequences, showing the phylogenetic relationships between the strains isolated in this study and their relatives in the orders Caulobacterales, Rhizobiales, Rhodobacterales, Rhodospirillales, and Sphingomonadales of the class of Alphaproteobacteria. Bootstrap values (>70%) are shown above nodes. Scale bar: 0.02 changes per nucleotide.Published as part of Jung, Hye Su, Yoon, Jung-Hoon, Joh, Kiseong, Seong, Chi-Nam, Kim, Won-Yong, Im, Wan-Taek, Kim, Myung-Kyum, Cha, Chang-Jun, Kim, Seung-Bum & Jeon, Che-Ok, 2021, A report of 35 unrecorded bacterial species belonging to the classes Alphaproteobacteria and Betaproteobacteria in Korea, pp. 12-22 in Journal of Species Research 10 (1) on page 17, DOI: 10.12651/JSR.2021.10.1.012, http://zenodo.org/record/812000
Gordonia neofelifaecis MN
No full textDescription of Gordonia neofelifaecis MN 13 Cells are Gramstainingpositive, nonflagellated and rod-shaped. Colonies are circular and cream-colored after 3 days on MA at 15°C. Positive for βgalactosidase in API 20NE but negative for indole production, arginine dihydrolase, esculin hydrolysis and gelatinase. D-Glucose, L-arabinose, D-mannitol, N-acetyl-glucosamine, gluconate and adipate are utilized. Does not utilize D-mannose, D-maltose, caprate, malate, citrate and phenylacetate. Strain MN13 (= NIBRBA0000114947) has been isolated from gut of mugil cephalus, Korea.Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 9, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/812037
Arthrobacter pascens NS
No full textDescription of Arthrobacter pascens NS 4Y-8-4 Cells are Gramstainingpositive, nonflagellated and rod-shaped. Colonies are circular, entire, convex and white-colored after 2 days on R2A at 30°C. Positive for esculin hydrolysis and βgalactosidase in API 20NE but negative for nitrate reduction, indole production, glucose fermentation, arginine dihydrolase, urease and gelatinase. D-Glucose, L-arabinose, D-mannitol, D-mannose, N-acetyl-glucosamine, D-maltose, gluconate, malate and citrate are utilized. Does not utilize caprate, adipate and phenylacetate. Strain NS 4Y-8-4 (= NIBRBA 0000114873) has been isolated from ginseng soil, Anseong, Korea.Published as part of Ko, Kwan Su, Cha, Chang-Jun, Im, Wan-Taek, Kim, Seung-Bum, Seong, Chi-Nam, Bae, Jin-Woo, Jahng, Kwangyeop, Cho, Jang-Cheon, Joh, Ki-seong & Lee, Soon Dong, 2017, A report of 34 unrecorded bacterial species in Korea, belonging to the Actinobacteria, pp. 1-14 in Journal of Species Research 6 (1) on page 11, DOI: 10.12651/JSR.2017.6.1.001, http://zenodo.org/record/812037
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