2 research outputs found
Modelling rock–water interactions in flooded underground coal mines, Northern Appalachian Basin
No full text
Inverse geochemical modelling was used to investigate rock–water interactions in flooded underground coal mines in northern Appalachia, USA. In early flooding, Pittsburgh seam mine waters are usually acidic (
c.
pH 3), with dissolved metals Fe and Al ranging from 10 to >100 mg l
−1
. Within a few decades, however, waters in fully flooded mines usually have pH of about 7 S.U., and alkalinity >300 mg l
−1
CaCO
3
Eq. Eh shifts from oxidizing (
c
. 500 to 700 mv) to reduced (−100 to −200 mv) conditions. Sodium concentrations may increase an order of magnitude; sulphate and iron concentrations may also increase. Water samples were collected from several mine-pools in West Virginia and Pennsylvania. A conceptual model was developed based on quantitative hydrology, mine-pool chemistry, mining conditions and mineralogy. The model was tested with the geochemical code PHREEQC. Simulations included mixing recharge and acid mine waters, precipitation–dissolution reactions involving carbonates, sulphates, oxy-hydroxides and sulphides, and ion adsorption and exchange. Na exchange was a dominant process in all models. Carbonates are orders of magnitude undersaturated in the juvenile mine-pool, but near saturation in the mature mine-pool, suggesting they are a primary source of acid neutralization and alkalinity. The mature mine-pool is simultaneously near equilibrium with iron sulphide, iron carbonate and iron oxy-hydroxide mineral phases. The rapid change in mine-pool water quality has substantial implications for management of these systems. Corresponding author [email protected]
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A metagenomic approach to characterize temperate bacteriophage populations from Cystic Fibrosis and non-Cystic Fibrosis bronchiectasis patients
No full textPseudomonas aeruginosa (Pa), normally a soil commensal, is an important opportunistic pathogen in Cystic Fibrosis (CF) and non-Cystic Fibrosis Bronchiectasis (nCFBR). Persistent infection correlates with accelerated decline in lung function and early mortality. The horizontal transfer of DNA by temperate bacteriophages can add gene function and selective advantages to their bacterial host within the constrained environment of the lower lung. In this study, we chemically induce temperate bacteriophages from clonal cultures of Pa and identify their mixed viral communities employing metagenomic approaches. We compared 92 temperate phage metagenomes stratified from these clinical backgrounds (47 CF and 45 nCFBR Pa isolates) using MG-RAST and GeneWise2. KEGG analysis shows the complexity of temperate phage accessory gene carriage increases with duration and severity of the disease. Furthermore, we identify the presence of Ig-like motifs within phage structural genes linked to bacterial adhesion and carbohydrate binding including Big_2, He_Pig, and Fn3. This study provides the first clinical support to the proposed bacteriophage adherence to mucus (BAM) model and the evolution of phages interacting at these mucosal surfaces over time
