1,283 research outputs found
Genome sequence of Rhodobacter sphaeroides strain WS8N
No full textCopyright © 2011, American Society for MicrobiologyRhodobacter sphaeroides is a metabolically diverse photosynthetic alphaproteobacterium found ubiquitously in soil and freshwater habitats. Here we present the annotated genome sequence of R. sphaeroides WS8N.This research was funded by the UK Biotechnology and Biological Sciences Research Council
R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-35</p>rhodosectionsatlas10041.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-35/rawdata/rhodosectionsatlas10041.mrc"
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rhodosectionsatlas10041.rec, Reconstruction (Pixel Size 0.64 nm), 2.5 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-35/3dimage_33106/rhodosectionsatlas10041.rec"
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R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-85</p>rhodosectionsatlas20032.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-85/rawdata/rhodosectionsatlas20032.mrc"
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rhodosectionsatlas20032.rec, Reconstruction (Pixel Size 0.64 nm), 2.5 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-85/3dimage_33205/rhodosectionsatlas20032.rec"
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R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-5</p>rhodosectionsatlas10006.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-5/rawdata/rhodosectionsatlas10006.mrc"
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rhodosectionsatlas10006_part61_30.rec, Reconstruction (Pixel Size 0.64 nm), 2.9 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-5/3dimage_33046/rhodosectionsatlas10006_part61_30.rec"
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R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-13</p>rhodosectionsatlas10015.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-13/rawdata/rhodosectionsatlas10015.mrc"
> <i class="download icon"></i> Download </a></p>
rhodosectionsatlas10015_full.rec, Reconstruction (Pixel Size 0.64 nm), 2.9 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-13/3dimage_33062/rhodosectionsatlas10015_full.rec"
> <i class="download icon"></i> Download </a></p>
R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-17</p>rhodosectionsatlas10020.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-17/rawdata/rhodosectionsatlas10020.mrc"
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rhodosectionsatlas10020_part61_1.rec, Reconstruction (Pixel Size 0.64 nm), 2.9 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-17/3dimage_33070/rhodosectionsatlas10020_part61_1.rec"
> <i class="download icon"></i> Download </a></p>
R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-95</p>rhodosectionsatlas20043.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-95/rawdata/rhodosectionsatlas20043.mrc"
> <i class="download icon"></i> Download </a></p>
rhodosectionsatlas20043_full.rec, Reconstruction (Pixel Size 0.64 nm), 2.9 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-95/3dimage_33224/rhodosectionsatlas20043_full.rec"
> <i class="download icon"></i> Download </a></p>
R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-58</p>rhodosectionsatlas20005.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-58/rawdata/rhodosectionsatlas20005.mrc"
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rhodosectionsatlas20005_part61_1.rec, Reconstruction (Pixel Size 0.64 nm), 2.9 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-58/3dimage_33151/rhodosectionsatlas20005_part61_1.rec"
> <i class="download icon"></i> Download </a></p>
R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-15</p>rhodosectionsatlas10018.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-15/rawdata/rhodosectionsatlas10018.mrc"
> <i class="download icon"></i> Download </a></p>
rhodosectionsatlas10018_full.rec, Reconstruction (Pixel Size 0.64 nm), 2.9 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-15/3dimage_33066/rhodosectionsatlas10018_full.rec"
> <i class="download icon"></i> Download </a></p>
R. sphaeroides Cryosections
No full textR. sphaeroides Cryosections strain 593<strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong> Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Ų, defocus: -10.0 μm, magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>Files available via S3 at https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-11</p>rhodosectionsatlas10013.mrc, Tilt Series (Pixel Size 0.32 nm), 1.7 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-11/rawdata/rhodosectionsatlas10013.mrc"
> <i class="download icon"></i> Download </a></p>
rhodosectionsatlas10013_full.rec, Reconstruction (Pixel Size 0.64 nm), 2.9 GB
<a role="button" class="ui compact mini button" href="https://renc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-11/3dimage_33058/rhodosectionsatlas10013_full.rec"
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