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Chapter 15 - Species and Structural Diversity Examples
The raw simulated samples from the BCI data: 100 replicate samples of 100 plots (400 m^2 circular plots) and the associated plot summary files for the examples in Chapter 15 are presented here. The raw BCI data are found at: https://datadryad.org/dataset/doi:10.15146/5xcp-0d46 (last accessed: 2025/09/14
Replication Data for: Acclimation to moderate hypoxia improves acute hypoxia tolerance of diploid and triploid brook charr
Raw data generated and analysed during completion of the study
Avoidance of heterospecific song overlapping in hermit thrush (Catharus guttatus) and its relationship to heterospecific song characteristics
The dataset contains the raw data related to song timing of playback stimuli and subjects during playback sessions, for the above-titled manuscript. Each text file contains song timing data based on the “Begin Time” and “End Time” in selection tables generated in Raven Pro, as described in the Methods. Each file contains the data from a single three-minute playback session. Playback songs are denoted by “P” and subject songs are denoted by “S” in each file
Supplementary Data Files to accompany: Sandeman, H.A.I., Honsberger, I.W., Spurrell, C., Peddle, C., Dunning, G., and Camacho, A. 2025. Intrusion-related (ca. 422 Ma), monzogranite-hosted Au-Ag-Sb mineralization at the Yellow Fox zone, eastern Mount Peyton Intrusive Suite, north-central Newfoundland, Canada
These seven files contain the supplementary data that accompany the publication for which the full citation and abstract are given below. Abstract: The northeastern and eastern parts of the ca. 425–416 Ma Mount Peyton Intrusive Suite in north-central Newfoundland, Canada, host several Au-Ag-Sb-bearing mineralized zones associated with fracture systems and narrow quartz veins mantled by wide, potassic (sericite-muscovite) alteration envelopes bearing arsenopyrite and locally pyrite and stibnite. The Yellow Fox zone is hosted in a medium-grained and plagioclase-porphyritic, granophyric-textured biotite ± hornblende I-type transitional to A2-type monzogranite in the northeastern part of the intrusive suite that is cut by rectilinearly fractured, muscovite-arsenopyrite-pyrite-rutile-alteration zones. This alteration occurs in an ~100 m long by 30 m wide, north-trending bleached and rusty alteration zone characterized by three distinct fracture sets: (1) a widely spaced, roughly east-west barren set; (2) a prominent north-trending 5–20 cm spaced set accompanied by abundant muscovite and disseminated arsenopyrite + pyrite; and (3) a weakly developed, north-northeast-trending set that locally hosts a few narrow (<4 cm) stibnite-quartz-arsenopyrite veins with arsenopyrite mainly confined to the quartz vein margins and intensely altered to supergene scorodite and goethite. Relative to unaltered granite, both muscovite-pyrite-arsenopyrite-rutile-altered monzogranite and stibnite-quartz-arsenopyrite-veined monzogranite are anomalous in many metals (Sb <11.1 wt.%; As < 4.5 wt.%; Au <59.4 g/t; Ag < 73g/t; Pb <5.5 wt.%; Zn <7 wt.%; Cd <717 ppm). The altered host rock yielded a crystallization age of 422.3 ± 1.3 Ma (CA-ID-TIMS U–Pb zircon), overlapping in error with two 40Ar/39Ar incremental-heating ages of 422.4 ± 0.2 Ma and 422.9 ± 0.6 Ma for muscovite from the same altered monzogranite. The coincident ages indicate that monzogranite crystallization and alteration were synchronous and therefore intrusion-related and formed broadly contemporaneously with proximal, mineralogically similar, intrusion-hosted mineralization in the region. Undated Au-Ag-As-Sb mineralization in the adjacent surrounding country rocks may also have been coeval. Fracturing, release of hydrothermal + magmatic fluids from deeper seated intrusions, and mineralization occurred during the final stages of monzogranite crystallization, which is interpreted to be associated with transient lithospheric extension that preceded north- to northwest-directed oblique Acadian thrusting, folding, and proximal orogenic Au mineralization in the Early Devonian (ca. <415 Ma)
Chapter 13 - McCain Forest Data
Data files and associated GIS layers (if applicable) for the examples shown in Chapter 13
Atlantic Puffin (Fratercula arctica) sex-biased dispersal dataset and manuscript
Dataset of known-sex Atlantic Puffins (Fratercula arctica) hatched on Machias Seal Island (2005-2014) with recruitment outcomes (philopatric, dispersed). The first dataset (ATPU_KnownSex2025_BCI_IFD_HY2005to2014_MSI) contains all known-sex puffins meeting the recruitment criteria. The second dataset (ATPU_KnownSex2025_onlyBCI_IFD_HY2005to2014_MSI) contains only puffins that have body condition and individual fledge date data. The R script (ATPU_SexBiasedDispersal_Code.R) performs chi-square tests, fisher exact tests, and binomial generalized linear models to evaluate whether there is evidence for sex-biased dispersal in Atlantic Puffins. Please see the manuscript for the full description of the datasets and methodology
Search for mystery client studies of sexual and reproductive health services
The notes field contains the full MEDLINE (Ovid) search strategy for mystery client studies of sexual and reproductive health services. The file in this dataset contain the full MEDLINE (Ovid), CINAHL (EBSCO), Academic Search Premier (EBSCO), Women’s Studies International (EBSCO), Web of Science Core Collection (Clarivate), and EMBASE (Elsevier) search strategies for this topic. Search date: (2025-02-20
Supplementary Data Files to accompany: "Cretaceous palynoevents in the circum-Arctic region." Williams, G.L., P. Bujak, J.P., Bringué, M., Fensome, R.A., Galloway, J.M., Nøhr-Hansen, H., and Blakey, R. 2025.
These three files contain the supplementary data that accompany the publication for which the full citation and abstract are given below. Abstract: The Cretaceous Period was a time generally of high sea levels, peaking in the Cenomanian and Turonian. With sea-level rise, the extent of shelf seas expanded, providing broad opportunities for plankton such as cystproducing dinoflagellates, which reached their maximum species richness during the Cretaceous. Because of their abundance, species richness, rapid evolution and distinctive morphology, organic-walled dinoflagellate cysts (dinocysts) have become the most important palynological index fossils for the period. Dinocysts are almost exclusively marine, and marine successions are extensive through the Cretaceous and across the Arctic. Spores and pollen (miospores), which are almost exclusively of terrestrial origin, are less prominent as index fossils in the Early Cretaceous: taxa tend to be long-ranging and taxonomy poorly constrained. However, with the advent of angiosperms and the increasing diversity and distinctiveness in the Late Cretaceous, pollen become more useful biostratigraphically upsection. Extensive zonation schemes based on palynomorphs have been proposed from Arctic Canada, Greenland and northern Russia, but they tend to be disparate, with little commonality or mutual correlation. For that reason, we have chosen to identify Cretaceous palynological bioevents (palynoevents) that potentially extend around the Arctic. We have identified 187 bioevents: 99 first occurrences and 87 last occurrences and 129 involving dinocysts and 58 involving miospores. The bioevents have been calibrated insofar as possible to independent age control, such as biozonation schemes based on ammonites and bivalves. The relationships of each event to stages and key fossil zonal schemes is shown on chronostratigraphic plots using the 2020 version of TimeScale Creator®
Divide and Correlate: Mapping Electronic Correlations in Proteins via Local Cut-Wise Reconstruction
This dataset contains one ORCA DFT input template used for all calculations, and individual ORCA output files for each spherical fragment radius (4, 5, and 6 Å) and the full-protein calculation. The inputs share the same settings, while the outputs differ according to each fragment’s local environment
Regenerable Luminescent Triarylborane-Functionalized Rare-Earth Metal-Organic Frameworks as Solid-State Small Molecule Sensors
Abstract: Fluoride anions (F-) are commonly found in everyday items and known to have positive medicinal uses. Despite their importance, overconsumption can lead to dental and skeletal fluorosis, amongst other health issues. In pursuit of a more effective method to detect trace amounts of anions in aqueous media, we synthesized two triarylborane-functionalized lanthanide metal-organic frameworks (LnBMOFs) to act as solid-state luminescent sensors. The LnBMOFs, EuBMOF and TbBMOF use europium and terbium, respectively as these metal ions display strong luminescent properties. The electrophilic nature of the triarylborane ligand makes it an ideal candidate for sensing high affinity fluoride, whilst also providing steric bulk to enhance the selectivity and stability of the LnBMOFs. We further demonstrate that LnBMOFs are capable of sensing other common anions including cyanide and hydroxide, expanding the scope of these sensors, while maintaining a high degree of sensitivity. The structural design of these LnBMOFs provide a turn-on/off effect, where the luminescence is regenerated and maintains stability through several cycles upon washing with water